Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 2.8e-241 838.2 416 100.0
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 7.4e-210 733.8 416 87.5
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.8e-207 724.2 416 86.5
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 7.4e-202 707.2 413 81.8
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 4.1e-200 701.4 414 82.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 7.9e-196 687.2 411 81.0
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 3.0e-195 685.3 411 80.3
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 3.9e-195 684.9 413 80.1
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 5.3e-192 674.5 442 76.7
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 6.9e-192 674.1 413 79.2
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 9.0e-192 673.7 438 77.2
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 2.0e-191 672.5 424 77.4
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.3e-190 669.8 411 78.6
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 5.5e-189 664.5 414 77.3
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-188 663.3 415 77.1
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 2.7e-188 662.1 409 78.7
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.8e-187 659.4 415 76.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.3e-187 659.1 414 77.8
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.0e-187 658.7 415 76.1
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 3.9e-187 658.3 417 80.8
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 2.8e-185 652.1 415 75.7
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 4.8e-185 651.4 413 76.0
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 6.3e-185 651.0 495 66.7
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.4e-184 649.8 407 76.9
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.8e-184 649.4 414 75.4
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 3.1e-184 648.7 411 74.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.1e-184 648.3 415 74.7
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.3e-184 647.9 414 75.8
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.2e-183 646.7 414 74.9
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.4e-183 645.2 414 75.4
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 3.4e-183 645.2 414 74.2
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 7.7e-183 644.0 413 74.1
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 5.0e-182 641.3 412 76.2
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.9e-181 639.4 430 73.3
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.4e-179 633.3 412 75.2
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 3.0e-179 632.1 374 81.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 1.1e-178 630.2 411 72.7
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 7.4e-178 627.5 407 73.7
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.2e-177 625.9 413 72.6
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.1e-176 623.6 412 73.8
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.8e-176 622.9 413 72.4
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 2.4e-176 622.5 405 73.3
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 9.1e-176 620.5 486 64.8
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 9.1e-176 620.5 414 71.5
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.6e-175 619.8 461 67.9
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.6e-175 619.0 413 72.2
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 2.2e-174 615.9 411 73.5
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 8.5e-174 614.0 364 80.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 1.5e-173 613.2 407 71.5
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.6e-172 609.8 409 71.1
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 8.0e-172 607.4 414 71.5
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 7.5e-170 600.9 414 69.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 9.7e-170 600.5 405 71.9
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.7e-170 600.5 414 71.7
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 1.7e-169 599.7 362 78.5
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.2e-169 599.4 414 71.7
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 6.3e-169 597.8 405 70.6
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 3.1e-168 595.5 409 69.9
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 7.7e-167 590.9 429 67.8
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-166 589.7 403 70.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.2e-165 585.5 331 88.2
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 1.2e-164 583.6 426 67.1
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 8.8e-163 577.4 403 68.0
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 2.2e-161 572.8 413 69.7
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 9.1e-160 567.4 414 67.4
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.7e-159 564.3 394 69.3
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.4e-152 543.5 406 66.7
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 3.1e-152 542.3 353 74.5
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 7.0e-152 541.2 328 81.4
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 5.9e-151 538.1 440 61.4
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.8e-148 529.3 348 73.0
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 8.0e-148 527.7 341 74.8
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 3.2e-144 515.8 423 61.7
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 4.6e-143 511.9 463 59.8
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.4e-136 489.6 279 87.5
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 3.0e-126 456.1 399 57.1
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-120 437.6 291 72.5
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.7e-118 430.3 404 52.5
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 1.1e-117 427.6 407 53.3
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.5e-117 427.2 277 72.9
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 3.3e-117 426.0 267 78.3
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 5.6e-117 425.2 276 73.2
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.1e-111 406.8 407 48.6
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 7.6e-106 388.3 412 49.3
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.3e-102 376.7 418 45.7
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 9.0e-99 364.8 403 46.9
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 9.9e-98 361.3 276 62.7
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 7.9e-95 351.7 315 56.8
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.9e-93 347.1 545 38.5
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 3.7e-92 342.8 264 65.9
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.4e-91 340.9 414 42.8
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 4.0e-91 339.3 423 42.3
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.8e-90 335.5 414 42.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.1e-88 331.3 220 74.5
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 2.7e-87 326.6 456 40.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-85 321.2 410 40.7
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 5.7e-85 318.9 401 43.6
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 5.7e-85 318.9 257 61.1
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 1.3e-84 317.8 418 41.4
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 1.2e-82 311.2 187 81.3
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.3e-78 297.0 423 39.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.1e-72 278.1 190 69.5
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.3e-69 266.5 419 37.9
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.2e-64 248.8 340 40.3
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 2.6e-61 240.4 365 39.7
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 5.9e-58 229.2 200 60.5
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 1.3e-57 228.0 160 72.5
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 2.9e-57 226.9 142 76.8
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 5.2e-54 216.1 419 33.2
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 9.1e-51 205.3 372 34.7
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 8.5e-49 198.7 254 46.1
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.5e-49 198.7 328 36.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 3.2e-48 196.8 401 32.2
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.7e-44 184.5 263 42.6
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.6e-42 177.9 315 36.2
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 3.5e-42 176.8 104 80.8
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 4.2e-40 169.9 216 48.1
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-40 169.1 116 65.5
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.0e-37 161.0 112 68.8
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 4.1e-35 153.3 132 62.1
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 9.2e-35 152.1 132 62.1
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-34 151.4 182 43.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.5e-34 150.2 133 50.4
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.3e-32 142.5 125 50.4
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.6e-31 140.2 206 38.3
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 8.9e-30 135.6 85 75.3
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.4e-29 133.7 277 32.5
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-27 128.6 227 34.8
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.3e-25 120.9 149 44.3
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 2.1e-23 114.4 76 73.7
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.8e-23 114.0 157 39.5
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 7.5e-21 105.9 55 85.5
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.0e-18 96.3 80 55.0
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.0e-17 95.5 77 53.2
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.3e-16 90.1 101 39.6
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 9.2e-11 72.4 261 24.9
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.9e-08 64.7 85 44.7
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 1.1e-06 58.9 174 28.7
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 3.1e-06 57.4 61 49.2
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.0e-06 57.0 44 54.5
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 5.2e-06 56.6 58 53.4


User provided reference genes

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