Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 1.1e-49 199.5 93 100.0
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 4.1e-44 181.0 89 91.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 4.1e-44 181.0 89 91.0
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 9.2e-44 179.9 89 88.8
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.2e-43 179.5 92 87.0
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.6e-43 179.1 93 86.0
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.6e-43 179.1 92 87.0
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.6e-43 179.1 92 87.0
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 3.5e-43 177.9 91 87.9
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 4.6e-43 177.6 92 84.8
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 7.8e-43 176.8 87 88.5
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 1.0e-42 176.4 94 87.2
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 1.3e-42 176.0 91 85.7
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 3.9e-42 174.5 87 87.4
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.1e-41 172.9 87 88.5
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 1.9e-41 172.2 88 85.2
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 3.3e-41 171.4 87 87.4
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 3.3e-41 171.4 87 87.4
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 4.3e-41 171.0 87 86.2
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 9.5e-41 169.9 90 81.1
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 9.5e-41 169.9 88 84.1
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 9.5e-41 169.9 91 81.3
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 1.2e-40 169.5 93 82.8
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.2e-40 169.5 92 82.6
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.2e-40 169.5 92 82.6
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.2e-40 169.5 92 82.6
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 2.1e-40 168.7 89 83.1
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 2.8e-40 168.3 91 80.2
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 2.8e-40 168.3 86 86.0
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 3.6e-40 167.9 91 78.0
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.6e-40 167.9 90 82.2
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.6e-40 167.9 92 81.5
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 8.0e-40 166.8 92 83.7
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 8.0e-40 166.8 90 81.1
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.0e-39 166.4 92 82.6
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.0e-39 166.4 93 81.7
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.4e-39 166.0 92 81.5
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 1.8e-39 165.6 93 78.5
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.8e-39 165.6 93 80.6
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.3e-39 165.2 95 78.9
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 4.0e-39 164.5 85 84.7
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 6.8e-39 163.7 93 79.6
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 1.2e-38 162.9 89 79.8
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.2e-38 162.9 89 79.8
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.2e-38 162.9 89 79.8
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.2e-38 162.9 89 79.8
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 1.5e-38 162.5 87 83.9
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.5e-38 162.5 85 82.4
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 2.0e-38 162.2 93 78.5
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.6e-38 161.8 85 84.7
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 4.4e-38 161.0 93 77.4
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 4.4e-38 161.0 92 78.3
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 5.8e-38 160.6 91 74.7
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 5.8e-38 160.6 85 81.2
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 5.8e-38 160.6 91 78.0
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 7.5e-38 160.2 87 78.2
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.7e-37 159.1 91 76.9
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.7e-37 159.1 93 80.6
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.7e-37 159.1 93 80.6
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 2.2e-37 158.7 85 80.0
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 2.2e-37 158.7 86 77.9
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 2.9e-37 158.3 85 82.4
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.9e-37 158.3 85 80.0
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 3.7e-37 157.9 90 77.8
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 3.7e-37 157.9 85 78.8
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 3.7e-37 157.9 85 83.5
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 3.7e-37 157.9 85 83.5
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 4.9e-37 157.5 87 79.3
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.9e-37 157.5 86 77.9
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 4.9e-37 157.5 93 75.3
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 6.4e-37 157.1 87 79.3
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 6.4e-37 157.1 87 79.3
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 6.4e-37 157.1 84 82.1
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 8.3e-37 156.8 86 79.1
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 8.3e-37 156.8 88 78.4
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.1e-36 156.4 86 77.9
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.1e-36 156.4 90 77.8
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 1.1e-36 156.4 93 76.3
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.4e-36 156.0 86 82.6
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-36 156.0 84 81.0
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-36 156.0 84 81.0
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 1.4e-36 156.0 87 78.2
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.9e-36 155.6 91 75.8
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 1.9e-36 155.6 90 77.8
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 2.4e-36 155.2 88 77.3
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 2.4e-36 155.2 91 76.9
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.2e-36 154.8 85 78.8
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 4.1e-36 154.5 91 76.9
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 5.4e-36 154.1 91 75.8
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 5.4e-36 154.1 91 75.8
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 5.4e-36 154.1 91 75.8
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 5.4e-36 154.1 91 75.8
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 5.4e-36 154.1 87 77.0
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 7.0e-36 153.7 86 76.7
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 9.2e-36 153.3 85 80.0
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 9.2e-36 153.3 85 80.0
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 9.2e-36 153.3 85 80.0
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 9.2e-36 153.3 85 80.0
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 1.6e-35 152.5 81 80.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 2.0e-35 152.1 81 82.7
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 6.0e-35 150.6 81 81.5
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.2e-32 142.9 73 82.2
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 2.1e-32 142.1 86 76.7
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 8.1e-32 140.2 84 77.4
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 5.2e-31 137.5 83 71.1
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.8e-31 137.1 93 67.7
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 8.9e-31 136.7 81 70.4
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.2e-30 136.3 91 67.0
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 1.5e-30 136.0 83 72.3
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 2.0e-30 135.6 83 72.3
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 3.4e-30 134.8 90 68.9
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 9.8e-30 133.3 85 70.6
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 1.1e-28 129.8 72 73.6
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 2.4e-28 128.6 93 62.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 9.2e-28 126.7 84 67.9
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 3.5e-27 124.8 84 65.5
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 9.9e-22 106.7 70 68.6
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 9.9e-22 106.7 70 68.6
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 3.2e-20 101.7 80 51.2
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 3.2e-20 101.7 82 51.2
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 7.1e-20 100.5 59 69.5
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 8.6e-18 93.6 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 8.9e-15 83.6 78 44.9
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 7.6e-14 80.5 42 73.8
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 1.3e-13 79.7 80 41.2
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.0e-10 70.1 41 82.9
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 1.3e-10 69.7 86 52.3
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 4.0e-07 58.2 56 48.2
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 6.9e-07 57.4 36 72.2
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 1.2e-06 56.6 36 69.4


User provided reference genes

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