Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 2.1e-46 188.7 99 100.0
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 3.4e-44 181.4 99 96.0
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 1.8e-42 175.6 97 93.8
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.1e-42 174.5 99 90.9
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 4.1e-42 174.5 99 90.9
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.7e-41 170.2 99 88.9
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 7.7e-41 170.2 99 90.9
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.7e-40 169.1 99 84.8
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 8.6e-40 166.8 99 85.9
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 8.6e-40 166.8 97 83.5
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 8.6e-40 166.8 97 83.5
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.9e-39 165.6 97 85.6
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 7.2e-39 163.7 97 81.4
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 9.5e-39 163.3 99 81.8
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.2e-38 162.9 99 81.8
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.6e-38 162.5 98 77.6
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.1e-38 162.2 99 83.8
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 2.1e-38 162.2 93 87.1
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 2.1e-38 162.2 93 84.9
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.8e-38 161.8 98 82.7
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 4.7e-38 161.0 93 83.9
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.4e-37 159.5 99 84.8
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.4e-37 159.5 99 80.8
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 1.2e-36 156.4 92 83.7
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.2e-36 156.4 98 79.6
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 1.5e-36 156.0 93 78.5
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 1.5e-36 156.0 94 79.8
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.5e-36 156.0 100 78.0
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 3.4e-36 154.8 94 79.8
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 3.4e-36 154.8 101 79.2
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 3.4e-36 154.8 94 83.0
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 4.4e-36 154.5 93 78.5
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 4.4e-36 154.5 99 84.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 5.7e-36 154.1 93 77.4
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 5.7e-36 154.1 92 79.3
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 7.5e-36 153.7 100 76.0
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 1.3e-35 152.9 95 76.8
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 1.3e-35 152.9 95 76.8
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 1.3e-35 152.9 95 76.8
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 1.7e-35 152.5 95 76.8
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 2.2e-35 152.1 94 77.7
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 2.2e-35 152.1 94 77.7
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 2.2e-35 152.1 94 77.7
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 2.2e-35 152.1 94 77.7
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 2.8e-35 151.8 95 76.8
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 3.7e-35 151.4 93 80.6
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 4.9e-35 151.0 99 80.8
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 4.9e-35 151.0 99 80.8
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 4.9e-35 151.0 95 77.9
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 4.9e-35 151.0 95 77.9
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 6.3e-35 150.6 97 79.4
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.1e-34 149.8 94 77.7
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.1e-34 149.8 98 75.5
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 1.4e-34 149.4 95 74.7
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 1.4e-34 149.4 93 80.6
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.4e-34 149.4 94 76.6
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 93 79.6
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.8e-34 149.1 99 76.8
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 1.8e-34 149.1 92 77.2
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 99 81.8
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.8e-34 149.1 99 81.8
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 94 75.5
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 94 75.5
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.1e-34 147.9 99 77.8
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.1e-34 147.9 98 75.5
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.1e-34 147.9 94 75.5
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.1e-34 147.9 94 75.5
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 70.1
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 9.2e-34 146.7 90 77.8
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 9.2e-34 146.7 99 80.8
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 75.3
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 4.5e-33 144.4 100 75.0
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.0e-32 143.3 101 77.2
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.3e-32 142.9 91 75.8
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 1.3e-32 142.9 103 74.8
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.3e-32 142.1 93 82.8
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 2.3e-32 142.1 99 75.8
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.9e-32 141.7 99 77.8
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 3.8e-32 141.4 99 74.7
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 3.8e-32 141.4 101 77.2
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 5.0e-32 141.0 99 77.8
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.9e-31 139.0 99 77.8
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 2.5e-31 138.7 103 69.9
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 3.3e-31 138.3 99 71.7
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 5.6e-31 137.5 99 73.7
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 7.3e-31 137.1 100 72.0
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 7.3e-31 137.1 93 78.5
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 9.5e-31 136.7 99 76.8
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 2.8e-30 135.2 101 72.3
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 6.1e-30 134.0 99 70.7
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 6.1e-30 134.0 94 68.1
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.0e-29 133.3 96 65.6
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 1.4e-29 132.9 91 73.6
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 3.0e-29 131.7 99 70.7
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 6.8e-29 130.6 92 76.1
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.5e-28 129.4 99 71.7
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 5.7e-28 127.5 99 72.7
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.2e-27 125.6 104 67.3
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.2e-27 125.6 104 68.3
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 6.4e-27 124.0 87 69.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.1e-26 123.2 90 68.9
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.4e-26 122.9 85 77.6
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.4e-26 122.9 85 77.6
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 4.1e-26 121.3 103 69.9
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 4.1e-26 121.3 100 64.0
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 7.0e-26 120.6 84 71.4
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 1.2e-25 119.8 95 69.5
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 2.0e-25 119.0 97 62.9
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 5.9e-25 117.5 92 71.7
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 1.3e-24 116.3 88 62.5
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.0e-24 115.2 101 60.4
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 8.6e-24 113.6 79 69.6
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.6e-24 113.6 104 61.5
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 7.3e-23 110.5 90 66.7
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.7e-22 107.8 79 74.7
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.9e-21 103.6 92 57.6
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 2.0e-20 102.4 68 75.0
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.6e-20 102.1 99 55.6
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 7.0e-18 94.0 90 57.8
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 9.2e-18 93.6 91 58.2
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.7e-16 89.4 99 57.6
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.7e-16 89.4 98 49.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 8.1e-14 80.5 100 48.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.4e-13 79.7 95 48.4
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 3.4e-12 75.1 100 47.0
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 8.3e-11 70.5 40 75.0
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 4.6e-09 64.7 101 42.6
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 3.9e-08 61.6 88 38.6
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 4.3e-07 58.2 56 55.4


User provided reference genes

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