Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G205000 Theobroma cacao HOM05D000003 ORTHO05D000004 1.2e-52 209.5 100 100.0
Atru.chr4.2177 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-11 70.9 99 33.3
Atru.chr2.258 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-10 67.8 98 34.7
CSS0007226 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.5e-10 67.8 92 35.9
Atru.chr1.2846 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-10 67.0 93 35.5
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-09 66.2 84 38.1
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-09 65.1 86 34.9
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.6e-09 64.7 69 40.6
Atru.chr6.307 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-08 63.5 98 28.6
CSS0050470 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.0e-08 63.5 93 32.3
COL.COLO4_08755 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.0e-08 63.5 85 36.5
QL03p009188 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-08 63.5 95 31.6
Atru.chr6.365 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.2 86 32.6
Atru.chr2.1221 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 100 33.0
Atru.chr6.509 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-08 62.0 84 34.5
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-08 61.6 87 31.0
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-08 61.6 98 29.6
CSS0001040 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.9e-08 61.6 97 32.0
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-08 60.8 94 33.0
Atru.chr3.1893 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-08 60.5 100 29.0
PSO478G3223 Papaver somniferum HOM05D000003 ORTHO05D000006 8.7e-08 60.5 99 33.3
Atru.chr2.1150 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.1 93 32.3
Thecc.05G133600 Theobroma cacao HOM05D000003 ORTHO05D000004 1.5e-07 59.7 51 47.1
CSS0011923 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.9e-07 59.3 96 30.2
CSS0014107 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-07 59.3 99 29.3
CSS0019468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-07 59.3 99 29.3
Sopen11g019660 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-07 59.3 99 30.3
Atru.chr2.1981 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 58.5 91 31.9
CSS0031577 Camellia sinensis var. sinensis HOM05D015897 ORTHO05D000004 3.3e-07 58.5 78 30.8
Atru.chr3.1819 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-07 58.2 93 34.4
Atru.chr4.1521 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-07 58.2 84 32.1
COL.COLO4_04627 Corchorus olitorius HOM05D008263 ORTHO05D009583 4.3e-07 58.2 79 35.4
Psat5g229160 Pisum sativum HOM05D000003 ORTHO05D000004 4.3e-07 58.2 97 30.9
Atru.chr2.2565 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-07 57.8 93 29.0
TPR.G27786 Trifolium pratense HOM05D000003 ORTHO05D000004 5.7e-07 57.8 78 34.6
Atru.chr1.2676 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-07 57.4 92 27.2
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-07 57.4 72 34.7
CSS0006262 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.4e-07 57.4 85 28.2
CSS0007673 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-06 56.6 99 29.3
CSS0016846 Camellia sinensis var. sinensis HOM05D015897 ORTHO05D000004 1.3e-06 56.6 79 31.6
CSS0026355 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-06 56.6 85 31.8
PSO675G4427 Papaver somniferum HOM05D000003 ORTHO05D000006 1.3e-06 56.6 98 28.6
TPR.G18505 Trifolium pratense HOM05D000003 ORTHO05D000004 1.3e-06 56.6 82 34.1
Atru.chr10.1687 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.2 84 29.8
Atru.chr4.1941 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.2 98 33.7
CSS0010571 Camellia sinensis var. sinensis HOM05D015897 ORTHO05D000004 1.6e-06 56.2 78 30.8
CSS0034714 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.6e-06 56.2 99 30.3
Atru.chr8.612 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 55.5 98 28.6
CSS0038659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.8e-06 55.5 92 26.1
Psat6g028480 Pisum sativum HOM05D000003 ORTHO05D000004 2.8e-06 55.5 77 35.1
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 55.1 98 29.6
CSS0003615 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-06 55.1 103 28.2
CSS0037277 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-06 55.1 85 32.9
CANSAT78G0265 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.1 74 33.8
PSO339G6285 Papaver somniferum HOM05D000003 ORTHO05D000006 3.7e-06 55.1 94 33.0
TPR.G33736 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-06 55.1 81 32.1
TPR.G40650 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-06 55.1 93 31.2
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-06 54.7 94 29.8
ECA233G2323 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.8e-06 54.7 101 32.7
CSS0014949 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.2e-06 54.3 85 29.4
CSS0039230 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.2e-06 54.3 85 29.4
CSS0041269 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.2e-06 54.3 85 29.4
PSO675G6557 Papaver somniferum HOM05D000003 ORTHO05D000006 6.2e-06 54.3 98 31.6
TPR.G36294 Trifolium pratense HOM05D000003 ORTHO05D000004 6.2e-06 54.3 95 30.5
Aqoxy4G01058 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.2e-06 53.9 83 30.1
CSS0006080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.2e-06 53.9 85 29.4
ECA236G2048 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.2e-06 53.9 91 28.6


User provided reference genes

Program Settings