Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 4.5e-197 691.0 343 100.0
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.4e-174 616.3 343 88.3
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.2e-173 613.2 342 87.4
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 3.5e-173 611.7 342 87.4
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.3e-172 609.0 342 87.4
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.3e-167 593.2 345 85.5
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.8e-161 572.8 349 85.4
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 4.6e-157 558.1 347 79.5
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.3e-155 551.6 354 79.4
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 4.7e-154 548.1 349 77.9
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 1.4e-153 546.6 363 74.4
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 2.3e-153 545.8 353 78.8
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 3.1e-153 545.4 353 77.9
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.6e-152 542.3 358 75.4
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 3.4e-152 542.0 357 75.4
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.4e-152 542.0 357 75.4
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 4.4e-152 541.6 361 74.2
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.8e-152 541.2 347 77.8
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 7.5e-152 540.8 358 75.1
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.9e-151 538.9 359 75.8
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 3.7e-151 538.5 357 76.5
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.9e-150 536.2 357 76.5
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 3.2e-150 535.4 360 75.3
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 6.0e-149 531.2 352 75.9
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 3.3e-147 525.4 353 75.6
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.3e-147 525.0 348 77.9
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 7.3e-147 524.2 357 74.2
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 4.0e-145 518.5 357 74.8
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 6.8e-145 517.7 346 72.3
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.2e-144 516.9 352 73.9
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.2e-144 516.9 349 77.9
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 2.0e-144 516.2 353 73.9
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 2.6e-144 515.8 359 73.5
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 4.4e-144 515.0 368 71.2
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 5.8e-144 514.6 351 74.4
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.3e-143 513.5 361 72.6
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.7e-143 513.1 360 73.1
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.7e-143 513.1 360 73.1
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.2e-143 512.7 357 72.8
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 2.2e-143 512.7 358 71.5
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 2.2e-143 512.7 358 70.9
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 2.2e-143 512.7 348 74.1
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 4.9e-143 511.5 354 71.2
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 4.9e-143 511.5 360 71.9
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 8.4e-143 510.8 361 71.2
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 1.1e-142 510.4 358 71.5
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.1e-142 510.4 357 70.9
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.4e-142 510.0 352 72.7
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.9e-142 509.6 353 73.1
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.2e-142 508.8 346 73.7
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 3.2e-142 508.8 359 73.0
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 4.2e-142 508.4 349 73.9
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 5.4e-142 508.1 354 73.2
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 6.0e-141 504.6 354 71.8
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.0e-140 503.8 374 71.1
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.0e-140 503.8 374 71.1
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 2.3e-140 502.7 357 70.0
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 2.3e-140 502.7 350 72.3
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.3e-140 502.7 360 71.1
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 3.0e-140 502.3 346 73.4
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 3.9e-140 501.9 350 70.9
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 5.1e-140 501.5 359 70.5
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 6.6e-140 501.1 359 70.5
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 8.7e-140 500.7 360 72.8
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 4.3e-139 498.4 351 70.1
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 4.3e-139 498.4 346 72.5
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 7.3e-139 497.7 351 72.1
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 9.6e-139 497.3 356 70.5
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.2e-138 496.9 359 69.6
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.2e-138 496.9 359 69.6
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 1.2e-138 496.9 340 72.6
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.8e-137 493.0 349 70.5
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.8e-137 493.0 349 70.5
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.1e-137 492.3 347 71.2
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.0e-137 491.9 340 71.2
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 9.0e-137 490.7 349 70.2
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.2e-136 490.3 328 75.6
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.2e-136 490.3 349 71.1
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.2e-136 490.3 347 69.7
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 2.6e-136 489.2 367 68.9
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.1e-134 483.8 313 76.7
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.1e-134 483.8 360 68.3
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 3.2e-134 482.3 350 70.3
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 4.2e-134 481.9 432 62.7
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.2e-133 480.3 341 72.1
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 1.2e-133 480.3 377 67.1
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 3.0e-132 475.7 347 69.2
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 5.6e-131 471.5 343 68.5
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.2e-128 463.8 355 66.2
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.2e-128 463.8 328 70.7
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.6e-128 462.6 360 66.1
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 3.4e-128 462.2 324 73.5
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.8e-128 461.5 351 67.0
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.7e-127 459.9 318 77.0
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 4.6e-125 451.8 350 66.0
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.0e-124 450.7 324 69.4
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 2.3e-124 449.5 354 65.3
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 3.0e-124 449.1 343 65.6
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.5e-123 446.0 351 64.7
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 7.6e-120 434.5 343 63.6
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 4.9e-119 431.8 368 63.3
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 6.4e-119 431.4 360 64.2
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.4e-119 431.0 358 62.6
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 2.7e-117 426.0 282 78.7
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 4.6e-117 425.2 343 63.3
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.0e-116 422.5 280 77.1
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 8.7e-116 421.0 286 75.2
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 5.8e-112 408.3 357 58.8
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.2e-110 402.1 345 59.7
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 9.3e-110 401.0 294 65.0
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.8e-105 386.7 327 60.2
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 4.1e-105 385.6 300 64.7
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.0e-104 383.3 315 62.5
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 5.5e-102 375.2 194 91.8
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.2e-101 374.0 351 57.5
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 4.1e-97 359.0 194 85.6
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 5.3e-97 358.6 296 62.2
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 9.1e-97 357.8 228 76.8
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 1.2e-96 357.5 342 54.4
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.6e-96 356.3 292 59.6
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 3.8e-95 352.4 345 55.1
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.9e-94 350.1 194 85.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 3.2e-94 349.4 346 52.0
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 6.7e-92 341.7 279 61.6
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 5.7e-91 338.6 293 56.0
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 4.0e-68 262.7 153 80.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 2.5e-62 243.4 210 61.9
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.4e-60 237.7 126 85.7
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.1e-53 213.8 201 53.7
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.7e-50 204.1 176 59.7
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 6.4e-50 202.2 141 73.0
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 8.9e-44 181.8 100 83.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.4e-41 174.5 124 67.7
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.6e-38 162.5 226 46.0
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.5e-32 143.3 152 52.6
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.0e-31 140.2 103 71.8
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.1e-31 139.4 140 57.1
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.4e-28 131.3 88 75.0
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 4.2e-25 119.8 73 72.6
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 7.1e-25 119.0 73 72.6
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.6e-16 89.7 117 41.9
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 8.1e-13 79.0 43 83.7
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 5.6e-06 56.2 70 51.4


User provided reference genes

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