Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 3.7e-171 604.7 295 100.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 5.1e-149 531.2 295 87.1
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.1e-148 530.0 295 87.8
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.6e-148 528.9 295 86.4
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 5.7e-148 527.7 295 86.8
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 3.3e-140 501.9 295 83.7
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 3.3e-119 432.2 297 71.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 5.4e-114 414.8 294 69.0
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 7.0e-114 414.5 295 68.8
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 3.5e-113 412.1 304 67.8
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.3e-112 409.5 295 67.5
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.0e-110 401.0 290 68.3
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 6.4e-107 391.3 290 68.3
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 6.4e-107 391.3 297 67.7
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 4.1e-106 388.7 295 63.7
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 7.0e-106 387.9 283 66.1
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.6e-105 386.7 303 65.3
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 3.5e-105 385.6 283 66.4
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 4.6e-105 385.2 283 66.4
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-104 383.6 279 66.7
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 2.3e-104 382.9 284 66.5
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.9e-104 382.1 303 63.4
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 5.0e-104 381.7 296 63.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 8.6e-104 380.9 283 66.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.9e-103 379.8 290 65.9
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.5e-103 379.4 317 63.4
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 3.3e-103 379.0 290 65.5
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.2e-102 377.1 283 65.4
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-102 377.1 291 65.3
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.6e-102 376.7 299 63.5
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-102 376.3 288 64.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.1e-102 376.3 312 63.8
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.1e-101 372.5 295 65.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 8.9e-101 370.9 287 64.5
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 8.9e-101 370.9 293 63.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.4e-100 369.0 279 65.2
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 4.4e-100 368.6 297 63.0
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 9.8e-100 367.5 286 64.7
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-99 366.7 290 61.7
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.9e-99 365.9 282 64.2
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 2.4e-98 362.8 288 63.2
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 3.2e-98 362.5 298 60.4
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.4e-98 361.7 290 62.8
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 7.0e-98 361.3 271 67.9
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.2e-97 360.5 325 59.1
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.6e-97 360.1 286 63.3
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 4.6e-97 358.6 293 63.8
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 2.3e-96 356.3 284 63.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 8.6e-96 354.4 294 61.6
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.1e-95 354.0 273 64.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.5e-95 353.6 294 62.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 5.6e-95 351.7 300 61.3
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 7.3e-95 351.3 301 60.8
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 7.3e-95 351.3 294 61.6
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.2e-94 350.5 287 62.7
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.2e-94 350.5 288 61.5
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.6e-94 350.1 292 60.3
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.6e-94 350.1 288 61.8
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.6e-94 350.1 291 61.5
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.8e-94 349.4 295 61.7
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.8e-93 346.7 295 59.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.2e-92 344.0 287 61.0
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 2.0e-92 343.2 265 64.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.6e-92 342.8 286 60.5
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.3e-91 340.5 291 58.1
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.7e-91 340.1 287 59.6
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.9e-91 339.3 292 58.9
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.7e-91 339.0 287 60.6
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 5.4e-90 335.1 274 62.4
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 2.1e-89 333.2 288 59.4
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.1e-89 333.2 291 60.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 7.8e-89 331.3 286 58.7
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 7.3e-87 324.7 274 60.6
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.6e-86 322.4 288 56.6
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.4e-85 320.5 295 56.3
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 4.0e-85 318.9 217 70.0
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 5.8e-84 315.1 292 57.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.2e-83 313.2 285 57.2
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 3.5e-81 305.8 289 56.4
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 7.8e-81 304.7 289 56.1
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 9.6e-79 297.7 289 54.0
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.8e-78 296.2 275 55.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.6e-78 295.8 271 56.8
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 3.1e-77 292.7 315 53.0
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 4.0e-77 292.4 339 47.5
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.9e-74 283.5 170 77.1
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 5.4e-74 282.0 247 59.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 3.5e-73 279.3 286 53.1
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 3.0e-72 276.2 175 74.3
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.9e-71 273.5 297 50.2
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.2e-68 264.2 285 49.8
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.0e-64 251.1 162 77.2
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.8e-64 250.4 173 71.1
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 5.6e-63 245.4 282 50.0
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 5.6e-63 245.4 288 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 4.8e-62 242.3 294 46.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.0e-61 238.0 159 70.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.0e-60 236.9 151 74.2
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.8e-59 232.6 287 44.6
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.7e-57 226.5 278 47.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.6e-55 218.0 292 42.5
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.1e-54 216.9 304 44.1
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.8e-54 216.5 317 43.8
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.8e-54 215.7 270 46.3
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 8.2e-54 214.9 279 43.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 2.4e-53 213.4 294 43.5
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.9e-51 206.5 292 42.8
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.9e-51 206.5 123 79.7
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 6.5e-51 205.3 118 80.5
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.0e-48 196.4 184 58.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.5e-47 194.1 291 40.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 8.2e-46 188.3 102 85.3
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 8.2e-46 188.3 294 39.5
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.6e-44 183.3 291 41.9
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.5e-44 182.6 217 46.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.5e-43 178.7 324 37.7
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.1e-42 177.9 105 79.0
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.4e-42 177.6 189 48.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.2e-42 176.4 323 37.2
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.3e-39 166.4 95 81.1
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-38 164.5 209 44.0
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.2e-38 161.8 115 64.3
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 3.1e-37 159.8 288 36.1
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.0e-35 152.5 226 41.6
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.6e-31 140.2 122 58.2
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.2e-30 137.1 200 40.0
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.2e-28 131.3 159 45.3
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.2e-27 127.1 155 46.5
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.5e-27 125.2 155 45.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-26 122.9 97 59.8
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 8.2e-22 108.6 57 86.0
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 5.5e-18 95.9 50 88.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.4e-13 81.3 46 78.3
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.2e-10 70.1 71 52.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.5e-10 69.3 111 36.9
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.2e-09 68.2 68 51.5
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 1.0e-08 65.1 94 39.4
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.0e-07 60.8 113 36.3
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 1.3e-06 58.2 62 50.0
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 2.2e-06 57.4 60 51.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 2.8e-06 57.0 50 60.0


User provided reference genes

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