Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 3.0e-66 255.0 123 100.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.5e-25 119.8 104 60.6
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.6e-24 116.3 104 61.5
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 4.8e-24 114.8 105 60.0
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 6.3e-24 114.4 104 59.6
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 6.3e-24 114.4 104 59.6
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.1e-23 113.6 109 58.7
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.4e-23 113.2 104 59.6
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.8e-23 112.8 104 61.5
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.1e-23 112.1 104 59.6
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.1e-23 112.1 104 59.6
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.1e-23 112.1 104 59.6
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.1e-23 112.1 104 59.6
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 4.1e-23 111.7 104 58.7
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 6.9e-23 110.9 104 57.7
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.2e-22 110.2 104 56.7
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.2e-22 110.2 104 57.7
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.2e-22 110.2 104 56.7
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.2e-22 110.2 114 54.4
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.5e-22 109.8 104 56.7
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.0e-22 109.4 104 56.7
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 2.0e-22 109.4 104 55.8
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 2.0e-22 109.4 104 55.8
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 2.6e-22 109.0 103 58.3
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.6e-22 109.0 104 56.7
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.6e-22 109.0 104 57.7
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 4.5e-22 108.2 104 55.8
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 4.5e-22 108.2 103 57.3
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 5.9e-22 107.8 105 57.1
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 5.9e-22 107.8 104 56.7
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 5.9e-22 107.8 104 57.7
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 5.9e-22 107.8 104 57.7
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 7.6e-22 107.5 105 55.2
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 7.6e-22 107.5 105 55.2
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 7.6e-22 107.5 104 57.7
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.0e-21 107.1 104 54.8
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.0e-21 107.1 104 54.8
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.0e-21 107.1 104 54.8
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.3e-21 106.7 105 54.3
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.7e-21 106.3 104 56.7
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.7e-21 106.3 104 55.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.2e-21 105.9 108 55.6
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 2.2e-21 105.9 104 54.8
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 2.2e-21 105.9 104 54.8
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 2.2e-21 105.9 107 54.2
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 2.2e-21 105.9 105 54.3
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 2.2e-21 105.9 104 54.8
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.9e-21 105.5 104 54.8
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 2.9e-21 105.5 103 56.3
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 5.0e-21 104.8 103 55.3
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 6.5e-21 104.4 104 54.8
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 6.5e-21 104.4 104 54.8
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 1.1e-20 103.6 102 54.9
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.1e-20 103.6 102 53.9
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.1e-20 103.6 103 55.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-20 103.6 92 63.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.4e-20 103.2 104 52.9
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 1.4e-20 103.2 104 53.8
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.4e-20 103.2 103 53.4
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.9e-20 102.8 103 54.4
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.9e-20 102.8 103 53.4
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.9e-20 102.8 102 54.9
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.5e-20 102.4 104 53.8
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.5e-20 102.4 105 52.4
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.2e-20 102.1 105 52.4
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 4.2e-20 101.7 102 52.9
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 4.2e-20 101.7 105 52.4
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 4.2e-20 101.7 103 52.4
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 5.5e-20 101.3 105 52.4
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 5.5e-20 101.3 104 51.9
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.3e-20 100.5 102 52.9
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 9.3e-20 100.5 104 51.9
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.2e-19 100.1 100 54.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.2e-19 100.1 103 52.4
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.2e-19 100.1 108 50.9
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.2e-19 100.1 102 57.8
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 2.7e-19 99.0 111 49.5
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.7e-19 99.0 112 49.1
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.7e-19 99.0 104 52.9
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 3.6e-19 98.6 111 48.6
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.1e-19 97.8 104 49.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 6.1e-19 97.8 102 51.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 6.1e-19 97.8 102 51.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 7.9e-19 97.4 107 50.5
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.0e-18 97.1 104 51.9
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.0e-18 97.1 102 52.0
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.0e-18 97.1 94 57.4
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.0e-18 97.1 104 47.1
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.4e-18 96.7 112 47.3
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.4e-18 96.7 102 52.9
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 2.3e-18 95.9 107 49.5
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 3.0e-18 95.5 102 50.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 3.0e-18 95.5 102 50.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 3.9e-18 95.1 104 49.0
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 5.1e-18 94.7 100 52.0
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.1e-17 93.6 102 48.0
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-17 92.8 101 48.5
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-17 92.8 101 48.5
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.9e-17 92.8 101 48.5
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.9e-17 92.8 101 48.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.9e-17 92.8 100 50.0
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.5e-17 92.4 94 55.3
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 5.7e-17 91.3 102 46.1
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 5.7e-17 91.3 101 47.5
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 7.4e-17 90.9 94 54.3
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.3e-16 90.1 101 46.5
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.7e-16 89.7 101 47.5
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 2.2e-16 89.4 101 46.5
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 3.7e-16 88.6 104 46.2
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 9.1e-15 84.0 104 44.2
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.4e-14 82.0 104 42.3
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 5.9e-14 81.3 104 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 7.7e-14 80.9 104 43.3
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 8.5e-13 77.4 102 37.3
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.9e-12 76.3 46 80.4
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 5.5e-12 74.7 43 81.4
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 7.9e-11 70.9 94 41.5
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 7.9e-11 70.9 40 85.0
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.4e-10 70.1 103 36.9
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 3.9e-10 68.6 43 74.4
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 5.1e-10 68.2 43 72.1
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 2.0e-09 66.2 49 63.3
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 4.4e-09 65.1 102 33.3
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.8e-08 61.6 68 44.1
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 1.4e-07 60.1 39 69.2
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 5.3e-07 58.2 61 50.8


User provided reference genes

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