Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 2.2e-225 785.4 438 100.0
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 7.9e-146 521.2 466 68.9
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 9.7e-144 514.2 471 69.0
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 1.4e-113 414.1 463 58.7
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 1.2e-112 411.0 463 57.2
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 5.3e-110 402.1 463 56.8
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 3.1e-89 333.2 472 49.4
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 5.4e-86 322.4 456 52.2
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 1.9e-83 313.9 470 47.2
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 3.3e-83 313.2 448 47.8
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 1.2e-82 311.2 323 59.4
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 6.2e-82 308.9 464 48.5
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 4.4e-80 302.8 461 45.8
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 2.9e-79 300.1 453 44.2
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 4.9e-79 299.3 472 45.6
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 3.2e-78 296.6 467 47.1
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 4.1e-78 296.2 500 44.8
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 5.1e-76 289.3 477 46.3
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.2e-72 278.1 477 45.5
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 5.8e-72 275.8 445 43.8
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 5.4e-70 269.2 463 43.6
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 1.6e-69 267.7 480 42.3
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 1.2e-66 258.1 487 41.7
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 6.8e-65 252.3 441 42.6
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 1.5e-64 251.1 457 43.5
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 5.8e-64 249.2 466 41.6
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 7.6e-64 248.8 457 43.5
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.7e-63 247.7 457 43.3
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 2.9e-63 246.9 457 41.6
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 2.9e-63 246.9 457 43.1
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.9e-59 234.2 201 60.7
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 2.5e-59 233.8 479 40.9
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 7.3e-59 232.3 478 40.6
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 1.6e-58 231.1 456 38.6
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 3.6e-58 229.9 402 44.5
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 9.0e-57 225.3 477 40.3
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 2.0e-56 224.2 458 39.3
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 5.8e-56 222.6 473 38.5
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 2.2e-55 220.7 511 38.2
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 3.8e-55 219.9 470 37.7
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 6.4e-55 219.2 475 39.8
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 6.4e-55 219.2 469 39.0
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 6.4e-55 219.2 451 37.5
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 2.4e-54 217.2 462 39.2
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 2.3e-52 210.7 471 37.8
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 5.1e-52 209.5 476 39.3
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 1.1e-51 208.4 506 40.9
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 1.3e-50 204.9 471 37.8
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 2.1e-50 204.1 392 41.6
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 4.8e-50 203.0 457 37.6
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 8.1e-50 202.2 481 38.9
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.0e-49 199.9 470 37.2
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.0e-49 199.9 470 37.2
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 4.0e-49 199.9 168 63.7
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 4.5e-48 196.4 475 37.3
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 7.6e-48 195.7 468 36.5
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 3.8e-47 193.4 473 37.6
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 6.4e-47 192.6 455 37.6
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 6.4e-47 192.6 474 42.6
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 8.4e-47 192.2 492 38.2
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 1.4e-46 191.4 455 37.1
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 3.2e-46 190.3 380 39.5
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 3.2e-46 190.3 444 36.9
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 5.4e-46 189.5 457 37.0
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 1.8e-44 184.5 453 37.1
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 5.1e-44 183.0 472 36.7
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 8.7e-44 182.2 447 36.2
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 1.5e-43 181.4 447 36.7
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 3.3e-43 180.3 449 35.9
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 3.3e-43 180.3 443 36.6
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 1.3e-42 178.3 449 35.6
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 1.3e-42 178.3 462 35.5
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 1.6e-42 177.9 470 36.0
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 2.1e-42 177.6 449 36.1
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 8.1e-42 175.6 449 35.4
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 4.0e-41 173.3 451 33.3
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 5.3e-41 172.9 479 35.7
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 2.0e-40 171.0 455 33.0
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.7e-39 167.9 383 39.7
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 4.9e-39 166.4 439 37.8
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 2.5e-38 164.1 451 33.5
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 2.5e-38 164.1 451 33.5
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 3.5e-37 160.2 448 34.8
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 7.9e-37 159.1 449 32.7
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 3.9e-36 156.8 443 33.0
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 7.4e-35 152.5 467 34.3
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 9.6e-35 152.1 440 33.6
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 5.3e-33 146.4 484 32.9
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 2.6e-32 144.1 445 32.6
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 4.5e-32 143.3 306 38.2
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 1.3e-31 141.7 454 31.9
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 6.5e-31 139.4 296 36.8
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 6.5e-31 139.4 469 31.8
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 1.9e-30 137.9 456 32.0
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.2e-29 135.2 119 63.9
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.2e-29 135.2 119 63.9
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 2.2e-26 124.4 505 31.7
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 2.8e-26 124.0 191 46.6
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 5.3e-25 119.8 522 30.7
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 1.7e-23 114.8 298 38.6
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 2.5e-22 110.9 394 30.7
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 1.8e-20 104.8 470 28.3
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 5.3e-17 93.2 201 36.3
Haze_13262 Corylus avellana HOM05D006668 ORTHO05D008252 2.9e-15 87.4 249 34.9
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 1.6e-13 81.6 271 31.7
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 5.7e-11 73.2 155 38.7
Ah.01g015540 Amaranthus hybridus HOM05D006668 ORTHO05D008252 7.4e-11 72.8 154 35.7
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 1.8e-09 68.2 207 33.3
unitig_46.g18247 Utricularia gibba HOM05D006668 ORTHO05D008252 1.6e-08 65.1 462 26.8
CSS0037366 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 4.5e-08 63.5 236 30.5
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 7.7e-08 62.8 74 51.4
Actinidia11116 Actinidia chinensis HOM05D006668 ORTHO05D008252 6.5e-07 59.7 206 36.4
CSS0027561 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.1e-06 58.9 236 29.7


User provided reference genes

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