Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G186600 Theobroma cacao HOM05D001491 ORTHO05D001443 4.3e-29 130.6 62 100.0
Thecc.09G106200 Theobroma cacao HOM05D001491 ORTHO05D001443 1.2e-15 85.9 56 75.0
Duzib168G1739 Durio zibethinus HOM05D001491 ORTHO05D001443 2.7e-15 84.7 56 75.0
Gohir.A07G005000 Gossypium hirsutum HOM05D001491 ORTHO05D001443 2.3e-14 81.6 56 71.4
Gohir.D07G007100 Gossypium hirsutum HOM05D001491 ORTHO05D001443 2.3e-14 81.6 56 71.4
Gorai.001G006700 Gossypium raimondii HOM05D001491 ORTHO05D001443 2.3e-14 81.6 56 71.4
Aqoxy7G01567 Aquilegia oxysepala HOM05D001491 ORTHO05D001443 8.6e-14 79.7 56 69.6
COL.COLO4_34814 Corchorus olitorius HOM05D001491 ORTHO05D001443 1.1e-13 79.3 57 71.9
TAR383G0535 Trochodendron aralioides HOM05D001491 ORTHO05D001443 3.3e-13 77.8 56 67.9
ATR0315G051 Amborella trichopoda HOM05D001491 ORTHO05D001443 5.6e-13 77.0 58 69.0
Nn2g11667 Nelumbo nucifera HOM05D001491 ORTHO05D001443 1.2e-12 75.9 56 66.1
MBI01_g30866_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 1.6e-12 75.5 56 66.1
Sabra06G0127000 Salix brachista HOM05D001491 ORTHO05D001443 2.8e-12 74.7 56 64.3
GSVIVG01015354001 Vitis vinifera HOM05D001491 ORTHO05D001443 3.6e-12 74.3 56 66.1
Haze_25779 Corylus avellana HOM05D001491 ORTHO05D001443 4.7e-12 73.9 56 66.1
vmacro00632 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 6.2e-12 73.6 56 66.1
Rhsim03G0239700 Rhododendron simsii HOM05D001491 ORTHO05D001443 8.1e-12 73.2 56 64.3
SalBow4G3117 Salvia bowleyana HOM05D001491 ORTHO05D001443 1.1e-11 72.8 56 60.7
CsaV3_1G045800 Cucumis sativus L. HOM05D001491 ORTHO05D001443 1.8e-11 72.0 57 64.9
TAR383G0677 Trochodendron aralioides HOM05D001491 ORTHO05D001443 1.8e-11 72.0 56 64.3
Dinv36665 Davidia involucrata HOM05D001491 ORTHO05D001443 2.3e-11 71.6 56 64.3
Atru.chr7.1379 Acer truncatum HOM05D001491 ORTHO05D001443 4.0e-11 70.9 57 64.9
vmacro06231 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 4.0e-11 70.9 56 64.3
Oeu015587.1 Olea europaea HOM05D001491 ORTHO05D001443 5.2e-11 70.5 50 68.0
Dinv30273 Davidia involucrata HOM05D001491 ORTHO05D001443 6.8e-11 70.1 56 62.5
Potri.006G161538 Populus trichocarpa HOM05D001491 ORTHO05D001443 8.9e-11 69.7 56 58.9
GSVIVG01035644001 Vitis vinifera HOM05D001491 ORTHO05D001443 8.9e-11 69.7 56 58.9
ClCG06G008820 Citrullus lanatus HOM05D001491 ORTHO05D001443 1.2e-10 69.3 57 63.2
MELO3C024695.2 Cucumis melo HOM05D001491 ORTHO05D001443 1.2e-10 69.3 57 64.9
QL02p022439 Quercus lobata HOM05D001491 ORTHO05D001443 1.2e-10 69.3 56 62.5
PSO566G0220 Papaver somniferum HOM05D001491 ORTHO05D001443 1.5e-10 68.9 60 65.0
RcHm_v2.0_Chr1g0336711 Rosa chinensis HOM05D001491 ORTHO05D001443 2.0e-10 68.6 56 58.9
Glyma.07G083900 Glycine max HOM05D001491 ORTHO05D001443 2.6e-10 68.2 56 55.4
Prupe.1G450200 Prunus persica HOM05D001491 ORTHO05D001443 3.4e-10 67.8 56 58.9
Lj2g0007755 Lotus japonicus HOM05D001491 ORTHO05D001443 4.4e-10 67.4 49 71.4
Sed0015938 Sechium edule HOM05D001491 ORTHO05D001443 4.4e-10 67.4 57 61.4
arahy.Tifrunner.gnm1.ann1.AXGS4F Arachis hypogaea HOM05D001491 ORTHO05D001443 5.8e-10 67.0 59 59.3
CSS0021011 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 5.8e-10 67.0 57 59.6
CSS0038282 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 5.8e-10 67.0 57 59.6
CiPaw.08G024900 Carya illinoinensis HOM05D001491 ORTHO05D001443 7.5e-10 66.6 56 57.1
FvH4_2g35762 Fragaria vesca HOM05D001491 ORTHO05D001443 7.5e-10 66.6 56 57.1
FAN27G2152 Fragaria x ananassa HOM05D001491 ORTHO05D001443 7.5e-10 66.6 56 57.1
Lalb_Chr24g0397451 Lupinus albus HOM05D001491 ORTHO05D001443 7.5e-10 66.6 56 58.9
Eucgr.C02911 Eucalyptus grandis HOM05D001491 ORTHO05D001443 9.8e-10 66.2 56 57.1
ECA234G4078 Erigeron canadensis HOM05D001491 ORTHO05D004187 1.3e-09 65.9 51 64.7
Eucgr.C02912 Eucalyptus grandis HOM05D001491 ORTHO05D001443 1.3e-09 65.9 56 57.1
PSO782G3751 Papaver somniferum HOM05D001491 ORTHO05D001443 1.3e-09 65.9 60 61.7
Prupe.7G225900 Prunus persica HOM05D001491 ORTHO05D001443 1.3e-09 65.9 56 58.9
CiPaw.08G025000 Carya illinoinensis HOM05D001491 ORTHO05D001443 1.7e-09 65.5 56 57.1
Cc08_g09250 Coffea canephora HOM05D001491 ORTHO05D001443 1.7e-09 65.5 58 58.6
MBI04_g05260_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 1.7e-09 65.5 58 58.6
SEGI_35757 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 1.7e-09 65.5 56 60.7
Thecc.09G042900 Theobroma cacao HOM05D001491 ORTHO05D001443 1.7e-09 65.5 49 61.2
HanXRQChr10g0318731 Helianthus annuus HOM05D001491 ORTHO05D001443 2.2e-09 65.1 56 58.9
Manes.16G072200 Manihot esculenta HOM05D001491 ORTHO05D001443 2.2e-09 65.1 56 57.1
CSS0012835 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 2.9e-09 64.7 56 55.4
CSS0031194 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 2.9e-09 64.7 56 55.4
CDE05G0702 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 2.9e-09 64.7 56 60.7
Dinv30274 Davidia involucrata HOM05D001491 ORTHO05D001443 2.9e-09 64.7 48 66.7
MD15G1191300 Malus domestica HOM05D001491 ORTHO05D001443 2.9e-09 64.7 56 57.1
Manes.16G113100 Manihot esculenta HOM05D001491 ORTHO05D001443 3.7e-09 64.3 58 60.3
Migut.A00219 Erythranthe guttata HOM05D001491 ORTHO05D001443 4.9e-09 63.9 54 59.3
Eucgr.C03808 Eucalyptus grandis HOM05D001491 ORTHO05D001443 4.9e-09 63.9 56 53.6
Nitab4.5_0021351g0010 Nicotiana tabacum HOM05D001491 ORTHO05D001443 4.9e-09 63.9 56 58.9
TWI63G1119 Tripterygium wilfordii HOM05D001491 ORTHO05D001443 4.9e-09 63.9 56 55.4
Gohir.A07G022600 Gossypium hirsutum HOM05D001491 ORTHO05D001443 6.4e-09 63.5 56 55.4
SalBow1G4091 Salvia bowleyana HOM05D001491 ORTHO05D001443 6.4e-09 63.5 56 57.1
FvH4_2g35761 Fragaria vesca HOM05D001491 ORTHO05D001443 8.3e-09 63.2 56 55.4
FAN24G0002 Fragaria x ananassa HOM05D001491 ORTHO05D001443 8.3e-09 63.2 56 55.4
FAN27G2520 Fragaria x ananassa HOM05D001491 ORTHO05D001443 8.3e-09 63.2 56 55.4
Gorai.001G027100 Gossypium raimondii HOM05D001491 ORTHO05D001443 8.3e-09 63.2 56 55.4
QL12p029343 Quercus lobata HOM05D001491 ORTHO05D001443 8.3e-09 63.2 56 57.1
Prupe.1G450100 Prunus persica HOM05D001491 ORTHO05D001443 1.1e-08 62.8 56 51.8
PGR142G3294 Punica granatum HOM05D001491 ORTHO05D001443 1.1e-08 62.8 58 56.9
Solyc08g066890.4 Solanum lycopersicum HOM05D001491 ORTHO05D001443 1.1e-08 62.8 56 57.1
Sopen08g020860 Solanum pennellii HOM05D001491 ORTHO05D001443 1.1e-08 62.8 56 57.1
Sopen08g020870 Solanum pennellii HOM05D001491 ORTHO05D001443 1.1e-08 62.8 56 57.1
Sopen08g020890 Solanum pennellii HOM05D001491 ORTHO05D001443 1.1e-08 62.8 56 57.1
CDE05G2873 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 1.4e-08 62.4 49 63.3
CDE05G3580 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 1.4e-08 62.4 56 58.9
Cc06_g10020 Coffea canephora HOM05D001491 ORTHO05D001443 1.4e-08 62.4 56 57.1
FvH4_2g35750 Fragaria vesca HOM05D001491 ORTHO05D001443 1.4e-08 62.4 56 55.4
Lsat_1_v5_gn_5_147860 Lactuca sativa HOM05D001491 ORTHO05D001443 1.4e-08 62.4 51 62.7
CiPaw.04G161900 Carya illinoinensis HOM05D001491 ORTHO05D001443 1.9e-08 62.0 56 55.4
COL.COLO4_18669 Corchorus olitorius HOM05D001491 ORTHO05D001443 1.9e-08 62.0 49 57.1
Thhalv10025609m.g Eutrema salsugineum HOM05D001491 ORTHO05D001443 1.9e-08 62.0 56 58.9
THA.LOC104814557 Tarenaya hassleriana HOM05D001491 ORTHO05D001443 1.9e-08 62.0 54 57.4
MSTRG.1656 Avicennia marina HOM05D001491 ORTHO05D001443 2.4e-08 61.6 56 53.6
COL.COLO4_18670 Corchorus olitorius HOM05D001491 ORTHO05D001443 2.4e-08 61.6 48 60.4
DCAR_028694 Daucus carota HOM05D001491 ORTHO05D001443 2.4e-08 61.6 49 59.2
ECA248G1854 Erigeron canadensis HOM05D001491 ORTHO05D001443 2.4e-08 61.6 56 53.6
QL12p023233 Quercus lobata HOM05D001491 ORTHO05D001443 2.4e-08 61.6 56 51.8
PGSC0003DMG400029085 Solanum tuberosum HOM05D001491 ORTHO05D001443 2.4e-08 61.6 56 57.1
CARHR236690 Cardamine hirsuta HOM05D001491 ORTHO05D001443 3.2e-08 61.2 56 57.1
Eucgr.C02910 Eucalyptus grandis HOM05D001491 ORTHO05D001443 3.2e-08 61.2 56 53.6
Eucgr.L02358 Eucalyptus grandis HOM05D001491 ORTHO05D001443 3.2e-08 61.2 49 59.2
Phvul.009G108300 Phaseolus vulgaris HOM05D001491 ORTHO05D001443 3.2e-08 61.2 56 48.2
Rhsim07G0152400 Rhododendron simsii HOM05D001491 ORTHO05D001443 3.2e-08 61.2 48 62.5
SEGI_04044 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 3.2e-08 61.2 56 58.9
BcaC09g51671 Brassica carinata HOM05D001491 ORTHO05D001443 4.1e-08 60.8 54 55.6
A01p09020 Brassica napus HOM05D001491 ORTHO05D001443 4.1e-08 60.8 54 55.6
C01p10560 Brassica napus HOM05D001491 ORTHO05D001443 4.1e-08 60.8 54 55.6
BolC1t01019H Brassica oleracea HOM05D001491 ORTHO05D001443 4.1e-08 60.8 54 55.6
BraA01t00850Z Brassica rapa HOM05D001491 ORTHO05D001443 4.1e-08 60.8 54 55.6
CiPaw.08G024800 Carya illinoinensis HOM05D001491 ORTHO05D001443 4.1e-08 60.8 56 51.8
Gohir.D07G026000 Gossypium hirsutum HOM05D001491 ORTHO05D001443 4.1e-08 60.8 56 53.6
Lj7A656G63 Lonicera japonica HOM05D001491 ORTHO05D001443 4.1e-08 60.8 56 58.9
CiPaw.03G228500 Carya illinoinensis HOM05D001491 ORTHO05D001443 5.4e-08 60.5 57 59.6
Solyc08g066923.1 Solanum lycopersicum HOM05D001491 ORTHO05D001443 5.4e-08 60.5 56 55.4
Lj7A656G62 Lonicera japonica HOM05D001491 ORTHO05D001443 7.1e-08 60.1 56 57.1
MBI04_g04856_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 7.1e-08 60.1 56 53.6
MD15G1095200 Malus domestica HOM05D001491 ORTHO05D001443 7.1e-08 60.1 49 59.2
RcHm_v2.0_Chr2g0091231 Rosa chinensis HOM05D001491 ORTHO05D001443 7.1e-08 60.1 56 51.8
Os01g0229800 Oryza sativa ssp. japonica HOM05D001491 ORTHO05D001443 9.2e-08 59.7 54 57.4
SGA_v2.0_scaffold810G53630 Striga asiatica HOM05D001491 ORTHO05D001443 9.2e-08 59.7 56 50.0
Os05g0228000 Oryza sativa ssp. japonica HOM05D001491 ORTHO05D001443 1.2e-07 59.3 54 57.4
A03p58540 Brassica napus HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 57.1
A03p58600 Brassica napus HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 57.1
BraA03t14914Z Brassica rapa HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 57.1
BraA03t14920Z Brassica rapa HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 57.1
Oeu064909.1 Olea europaea HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 53.6
SEGI_27701 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 1.6e-07 58.9 56 57.1
arahy.Tifrunner.gnm1.ann1.66BVBV Arachis hypogaea HOM05D001491 ORTHO05D001443 2.1e-07 58.5 56 44.6
arahy.Tifrunner.gnm1.ann1.8YLP1I Arachis hypogaea HOM05D001491 ORTHO05D001443 2.1e-07 58.5 56 44.6
arahy.Tifrunner.gnm1.ann1.TPCS2D Arachis hypogaea HOM05D001491 ORTHO05D001443 2.1e-07 58.5 56 44.6
Eucgr.C01272 Eucalyptus grandis HOM05D001491 ORTHO05D001443 2.1e-07 58.5 57 52.6
Eucgr.L02649 Eucalyptus grandis HOM05D001491 ORTHO05D001443 2.1e-07 58.5 57 52.6
Glyma.06G084200 Glycine max HOM05D001491 ORTHO05D001443 2.1e-07 58.5 56 46.4
Peaxi162Scf00161g00067 Petunia axillaris HOM05D001491 ORTHO05D001443 2.1e-07 58.5 49 59.2
AL7G23500 Arabidopsis lyrata HOM05D001491 ORTHO05D001443 2.7e-07 58.2 56 55.4
AT4G28940 Arabidopsis thaliana HOM05D001491 ORTHO05D001443 2.7e-07 58.2 56 55.4
HanXRQChr01g0029771 Helianthus annuus HOM05D001491 ORTHO05D001443 2.7e-07 58.2 56 51.8
Hund03404 Selenicereus undatus HOM05D001491 ORTHO05D001443 4.6e-07 57.4 56 50.0
Carub.0007s1168 Capsella rubella HOM05D001491 ORTHO05D001443 6.0e-07 57.0 56 53.6
Sp1g29010 Schrenkiella parvula HOM05D001491 ORTHO05D001443 6.0e-07 57.0 54 51.9
Zm00001eb119280 Zea mays HOM05D001491 ORTHO05D001443 6.0e-07 57.0 58 51.7
Eucgr.C01273 Eucalyptus grandis HOM05D001491 ORTHO05D001443 7.8e-07 56.6 56 48.2
FAN23G1639 Fragaria x ananassa HOM05D001491 ORTHO05D004187 7.8e-07 56.6 56 53.6
HanXRQChr11g0351781 Helianthus annuus HOM05D001491 ORTHO05D001443 7.8e-07 56.6 56 50.0
TAR383G0778 Trochodendron aralioides HOM05D001491 ORTHO05D001443 7.8e-07 56.6 57 47.4
arahy.Tifrunner.gnm1.ann1.0R4JGR Arachis hypogaea HOM05D001491 ORTHO05D001443 1.0e-06 56.2 48 56.2
arahy.Tifrunner.gnm1.ann1.XAYE67 Arachis hypogaea HOM05D001491 ORTHO05D001443 1.0e-06 56.2 48 56.2
BcaNung02897 Brassica carinata HOM05D001491 ORTHO05D001443 1.3e-06 55.8 56 55.4
C07p56540 Brassica napus HOM05D001491 ORTHO05D001443 1.3e-06 55.8 56 55.4
BolC7t46131H Brassica oleracea HOM05D001491 ORTHO05D001443 1.3e-06 55.8 56 55.4
ECA248G3232 Erigeron canadensis HOM05D001491 ORTHO05D001443 1.3e-06 55.8 56 51.8
Ca_15603_v3 Cicer arietinum L. HOM05D001491 ORTHO05D001443 2.3e-06 55.1 56 42.9
EL10Ac2g04043 Beta vulgaris HOM05D001491 ORTHO05D001443 3.0e-06 54.7 56 48.2
FvH4_1g05530 Fragaria vesca HOM05D001491 ORTHO05D001443 3.0e-06 54.7 56 51.8
FAN19G1100 Fragaria x ananassa HOM05D001491 ORTHO05D001443 3.0e-06 54.7 56 51.8
FAN26G3114 Fragaria x ananassa HOM05D001491 ORTHO05D001443 3.0e-06 54.7 56 51.8
FAN28G2105 Fragaria x ananassa HOM05D001491 ORTHO05D001443 3.0e-06 54.7 56 51.8
VMungo1309G2230 Vigna mungo HOM05D001491 ORTHO05D001443 3.0e-06 54.7 49 49.0
BcaNung02896 Brassica carinata HOM05D001491 ORTHO05D001443 3.9e-06 54.3 55 52.7
HanXRQChr01g0029821 Helianthus annuus HOM05D001491 ORTHO05D001443 5.1e-06 53.9 54 48.1
BcaNung01347 Brassica carinata HOM05D001491 ORTHO05D001443 6.6e-06 53.5 54 50.0
BcaNung01352 Brassica carinata HOM05D001491 ORTHO05D001443 6.6e-06 53.5 54 50.0
BcaNung02894 Brassica carinata HOM05D001491 ORTHO05D001443 6.6e-06 53.5 56 50.0
C07p56550 Brassica napus HOM05D001491 ORTHO05D001443 6.6e-06 53.5 56 50.0
BolC7t46133H Brassica oleracea HOM05D001491 ORTHO05D001443 6.6e-06 53.5 56 50.0


User provided reference genes

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