Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G181400 Theobroma cacao HOM05D000613 ORTHO05D000446 2.9e-35 151.4 77 100.0
Prupe.6G120800 Prunus persica HOM05D000613 ORTHO05D000446 5.3e-13 77.4 63 60.3
COL.COLO4_19960 Corchorus olitorius HOM05D000613 ORTHO05D000446 2.0e-12 75.5 52 73.1
Duzib150G1136 Durio zibethinus HOM05D000613 ORTHO05D000446 2.9e-11 71.6 52 67.3
TWI31G0082 Tripterygium wilfordii HOM05D000613 ORTHO05D000446 3.8e-11 71.2 52 69.2
Gohir.A09G093800 Gossypium hirsutum HOM05D000613 ORTHO05D000446 1.4e-10 69.3 52 67.3
GSVIVG01031386001 Vitis vinifera HOM05D000613 ORTHO05D000446 1.4e-10 69.3 52 67.3
Dinv29436 Davidia involucrata HOM05D000613 ORTHO05D000446 1.9e-10 68.9 52 65.4
Thecc.09G290100 Theobroma cacao HOM05D000613 ORTHO05D000446 1.9e-10 68.9 52 67.3
Gorai.006G110100 Gossypium raimondii HOM05D000613 ORTHO05D000446 2.5e-10 68.6 52 67.3
vmacro14361 Vaccinium macrocarpon HOM05D000613 ORTHO05D000446 2.5e-10 68.6 52 65.4
AUR62009805 Chenopodium quinoa HOM05D000613 ORTHO05D000446 3.2e-10 68.2 52 65.4
CANSAT54G1868 Cannabis sativa HOM05D000613 ORTHO05D000446 4.2e-10 67.8 52 63.5
DCAR_012174 Daucus carota HOM05D000613 ORTHO05D000446 4.2e-10 67.8 52 65.4
Hma1.2p1_0695F.1_g204450 Hydrangea macrophylla HOM05D000613 ORTHO05D000446 4.2e-10 67.8 52 67.3
Nn7g38261 Nelumbo nucifera HOM05D000613 ORTHO05D000446 4.2e-10 67.8 52 63.5
SalBow6G3775 Salvia bowleyana HOM05D000613 ORTHO05D000446 5.5e-10 67.4 48 68.8
SalBow7G2121 Salvia bowleyana HOM05D000613 ORTHO05D000446 5.5e-10 67.4 48 68.8
Cpa.g.sc47.73 Carica papaya HOM05D000613 ORTHO05D000446 9.4e-10 66.6 47 70.2
Ciclev10028244m.g Citrus clementina HOM05D000613 ORTHO05D000446 9.4e-10 66.6 52 63.5
Gohir.D09G093500 Gossypium hirsutum HOM05D000613 ORTHO05D000446 9.4e-10 66.6 52 65.4
Manes.11G158700 Manihot esculenta HOM05D000613 ORTHO05D000446 9.4e-10 66.6 48 68.8
FvH4_3g29650 Fragaria vesca HOM05D000613 ORTHO05D000446 1.2e-09 66.2 52 65.4
FAN11G3077 Fragaria x ananassa HOM05D000613 ORTHO05D000446 1.2e-09 66.2 52 65.4
MD03G1136100 Malus domestica HOM05D000613 ORTHO05D000446 1.2e-09 66.2 52 65.4
RcHm_v2.0_Chr5g0055011 Rosa chinensis HOM05D000613 ORTHO05D000446 1.2e-09 66.2 52 63.5
HanXRQChr11g0345911 Helianthus annuus HOM05D000613 ORTHO05D000446 1.6e-09 65.9 52 59.6
CiPaw.13G140000 Carya illinoinensis HOM05D000613 ORTHO05D000446 2.1e-09 65.5 48 66.7
ATR1096G040 Amborella trichopoda HOM05D000613 ORTHO05D000446 2.7e-09 65.1 52 57.7
Carub.0004s0851 Capsella rubella HOM05D000613 ORTHO05D000446 2.7e-09 65.1 52 57.7
SGA_v2.0_scaffold27G11624 Striga asiatica HOM05D000613 ORTHO05D000446 2.7e-09 65.1 52 59.6
FAN16G0170 Fragaria x ananassa HOM05D000613 ORTHO05D000446 3.6e-09 64.7 52 63.5
AUR62038117 Chenopodium quinoa HOM05D000613 ORTHO05D000446 4.6e-09 64.3 52 61.5
AUR62043078 Chenopodium quinoa HOM05D000613 ORTHO05D000446 4.6e-09 64.3 52 61.5
unitig_747.g21951 Utricularia gibba HOM05D000613 ORTHO05D000446 4.6e-09 64.3 45 66.7
CSS0044985 Camellia sinensis var. sinensis HOM05D000613 ORTHO05D000446 6.1e-09 63.9 52 61.5
FAN25G2504 Fragaria x ananassa HOM05D000613 ORTHO05D000446 6.1e-09 63.9 52 63.5
PSO384G3251 Papaver somniferum HOM05D000613 ORTHO05D000446 6.1e-09 63.9 48 64.6
Thhalv10016598m.g Eutrema salsugineum HOM05D000613 ORTHO05D000446 7.9e-09 63.5 52 57.7
Sc21g0004750 Simmondsia chinensis HOM05D000613 ORTHO05D000446 7.9e-09 63.5 52 61.5
PSO443G0071 Papaver somniferum HOM05D000613 ORTHO05D000446 1.0e-08 63.2 48 62.5
QL01p013431 Quercus lobata HOM05D000613 ORTHO05D000446 1.0e-08 63.2 52 59.6
AT2G27760 Arabidopsis thaliana HOM05D000613 ORTHO05D000446 1.4e-08 62.8 52 55.8
Dinv12513 Davidia involucrata HOM05D000613 ORTHO05D000446 1.4e-08 62.8 52 61.5
Sabra09G0113800 Salix brachista HOM05D000613 ORTHO05D000446 1.4e-08 62.8 56 58.9
Aqoxy2G01362 Aquilegia oxysepala HOM05D000613 ORTHO05D000446 2.3e-08 62.0 52 59.6
C04p56910 Brassica napus HOM05D000613 ORTHO05D000446 2.3e-08 62.0 52 57.7
Actinidia35452 Actinidia chinensis HOM05D000613 ORTHO05D000446 3.0e-08 61.6 52 61.5
Eucgr.J00446 Eucalyptus grandis HOM05D000613 ORTHO05D000446 3.0e-08 61.6 48 62.5
Psat7g189920 Pisum sativum HOM05D000613 ORTHO05D000446 3.0e-08 61.6 52 55.8
Nitab4.5_0011810g0010 Nicotiana tabacum HOM05D000613 ORTHO05D000446 3.9e-08 61.2 52 59.6
Glyma.11G188100 Glycine max HOM05D000613 ORTHO05D000446 5.1e-08 60.8 52 59.6
Nitab4.5_0006089g0050 Nicotiana tabacum HOM05D000613 ORTHO05D000446 5.1e-08 60.8 52 57.7
PGR119G0205 Punica granatum HOM05D000613 ORTHO05D000446 5.1e-08 60.8 48 64.6
Sp4g10590 Schrenkiella parvula HOM05D000613 ORTHO05D000446 5.1e-08 60.8 52 55.8
Sed0023377 Sechium edule HOM05D000613 ORTHO05D000446 5.1e-08 60.8 52 61.5
Lj3g0004331 Lotus japonicus HOM05D000613 ORTHO05D000446 6.7e-08 60.5 52 57.7
Lalb_Chr03g0027961 Lupinus albus HOM05D000613 ORTHO05D000446 6.7e-08 60.5 52 57.7
THA.LOC104800550 Tarenaya hassleriana HOM05D000613 ORTHO05D000446 6.7e-08 60.5 53 58.5
AL4G22540 Arabidopsis lyrata HOM05D000613 ORTHO05D000446 8.8e-08 60.1 52 53.8
Migut.D02360 Erythranthe guttata HOM05D000613 ORTHO05D000446 8.8e-08 60.1 46 65.2
Phvul.011G091500 Phaseolus vulgaris HOM05D000613 ORTHO05D000446 8.8e-08 60.1 52 59.6
Cc01_g09670 Coffea canephora HOM05D000613 ORTHO05D000446 1.1e-07 59.7 52 55.8
MELO3C004783.2 Cucumis melo HOM05D000613 ORTHO05D000446 1.1e-07 59.7 52 59.6
CsaV3_1G014570 Cucumis sativus L. HOM05D000613 ORTHO05D000446 1.1e-07 59.7 52 59.6
Potri.009G147600 Populus trichocarpa HOM05D000613 ORTHO05D000446 1.5e-07 59.3 52 55.8
BcaC02g08231 Brassica carinata HOM05D000613 ORTHO05D000446 2.0e-07 58.9 52 55.8
BolC4t27227H Brassica oleracea HOM05D000613 ORTHO05D000446 2.0e-07 58.9 52 55.8
Sabra09G0116300 Salix brachista HOM05D000613 ORTHO05D000446 2.0e-07 58.9 52 57.7
CAN.G644.22 Capsicum annuum HOM05D000613 ORTHO05D000446 2.6e-07 58.5 48 60.4
PGSC0003DMG400026541 Solanum tuberosum HOM05D000613 ORTHO05D000446 2.6e-07 58.5 46 65.2
Zm00001eb139980 Zea mays HOM05D000613 ORTHO05D000446 2.6e-07 58.5 52 50.0
arahy.Tifrunner.gnm1.ann1.013JYW Arachis hypogaea HOM05D000613 ORTHO05D000446 3.3e-07 58.2 48 60.4
arahy.Tifrunner.gnm1.ann1.B80SH2 Arachis hypogaea HOM05D000613 ORTHO05D000446 3.3e-07 58.2 48 60.4
ECA248G3409 Erigeron canadensis HOM05D000613 ORTHO05D000446 3.3e-07 58.2 52 57.7
Lsat_1_v5_gn_1_62120 Lactuca sativa HOM05D000613 ORTHO05D000446 3.3e-07 58.2 52 57.7
Ca_19380_v3 Cicer arietinum L. HOM05D000613 ORTHO05D000446 4.4e-07 57.8 52 53.8
TPR.G15581 Trifolium pratense HOM05D000613 ORTHO05D000446 5.7e-07 57.4 52 53.8
Aa31LG5G8240 Aethionema arabicum HOM05D000613 ORTHO05D000446 7.4e-07 57.0 52 55.8
A04p21110 Brassica napus HOM05D000613 ORTHO05D000446 7.4e-07 57.0 52 53.8
BraA04t17680Z Brassica rapa HOM05D000613 ORTHO05D000446 7.4e-07 57.0 52 53.8
Oeu058280.1 Olea europaea HOM05D000613 ORTHO05D000446 7.4e-07 57.0 48 58.3
Solyc11g066960.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 7.4e-07 57.0 52 57.7
TAR633G1306 Trochodendron aralioides HOM05D000613 ORTHO05D000446 7.4e-07 57.0 52 55.8
Sopen11g026680 Solanum pennellii HOM05D000613 ORTHO05D000446 1.3e-06 56.2 52 57.7
BcaB06g28166 Brassica carinata HOM05D000613 ORTHO05D000446 1.7e-06 55.8 52 50.0
SHI06113 Sapria himalayana HOM05D000613 ORTHO05D000446 1.7e-06 55.8 48 56.2
ClCG01G012600 Citrullus lanatus HOM05D000613 ORTHO05D000446 2.2e-06 55.5 52 55.8
Medtr4g055110 Medicago truncatula HOM05D000613 ORTHO05D000446 3.7e-06 54.7 48 54.2
Oeu050191.2 Olea europaea HOM05D000613 ORTHO05D000446 3.7e-06 54.7 46 58.7
Thecc.06G049800 Theobroma cacao HOM05D000613 ORTHO05D000446 4.8e-06 54.3 74 50.0
QL12p022357 Quercus lobata HOM05D000613 ORTHO05D000446 8.2e-06 53.5 41 56.1


User provided reference genes

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