Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 2.1e-113 412.5 234 100.0
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.1e-74 283.9 237 70.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.9e-74 283.1 230 71.7
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 2.1e-73 279.6 239 67.4
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-71 273.5 240 71.2
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.3e-67 259.6 245 65.3
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.0e-63 246.5 240 65.8
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 6.7e-59 231.5 240 62.1
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.1e-56 224.2 240 60.8
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.0e-51 206.1 250 52.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.0e-51 206.1 250 52.4
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.7e-49 199.1 249 50.6
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 6.3e-49 198.4 238 51.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.1e-48 197.6 249 50.2
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.5e-46 188.3 175 66.9
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.2e-44 184.1 266 47.0
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.6e-44 182.6 241 52.7
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 5.7e-42 175.3 236 49.2
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.3e-41 174.1 161 56.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.3e-41 174.1 232 53.4
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.8e-40 170.2 262 43.5
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 4.1e-40 169.1 164 59.1
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.9e-40 168.3 237 49.4
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 9.1e-40 167.9 231 45.0
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.2e-39 167.5 243 49.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.2e-39 167.5 230 50.9
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.6e-39 166.4 246 48.0
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.0e-38 164.5 250 50.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.0e-38 164.5 254 44.1
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.3e-38 164.1 255 44.7
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.3e-38 164.1 253 48.6
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 5.0e-38 162.2 251 49.4
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 5.0e-38 162.2 242 49.2
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.5e-38 161.8 236 48.3
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 8.5e-38 161.4 231 45.9
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.1e-37 161.0 231 51.5
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.1e-37 161.0 246 44.7
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.4e-37 160.6 226 46.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.4e-37 160.6 231 48.1
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.9e-37 160.2 254 43.7
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.9e-37 160.2 247 44.9
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.9e-37 160.2 250 50.8
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 3.2e-37 159.5 228 44.3
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.2e-37 159.5 259 45.9
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 3.2e-37 159.5 251 43.8
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 4.2e-37 159.1 222 45.9
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.2e-37 159.1 229 46.7
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 4.2e-37 159.1 234 45.3
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 5.5e-37 158.7 237 46.8
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 7.2e-37 158.3 274 41.6
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 9.4e-37 157.9 230 47.0
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 9.4e-37 157.9 251 49.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.2e-36 157.5 233 47.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.6e-36 157.1 258 44.2
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.7e-36 156.4 252 41.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 3.6e-36 156.0 250 42.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 3.6e-36 156.0 182 48.4
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.0e-35 154.5 181 50.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.0e-35 154.5 232 47.4
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.4e-35 154.1 235 45.1
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.4e-35 154.1 176 54.5
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-35 153.7 231 46.3
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 1.8e-35 153.7 245 49.4
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.3e-35 153.3 260 45.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.3e-35 153.3 230 47.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.3e-35 153.3 230 44.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 3.0e-35 152.9 256 47.3
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.9e-35 152.5 227 45.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 5.2e-35 152.1 260 45.0
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.2e-35 152.1 237 48.1
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 6.7e-35 151.8 173 56.6
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 6.7e-35 151.8 272 44.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 8.8e-35 151.4 229 50.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 8.8e-35 151.4 240 44.2
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.8e-35 151.4 235 46.8
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-34 150.2 232 45.3
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.0e-34 150.2 227 45.8
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.6e-34 149.8 229 46.7
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.3e-34 149.4 227 45.4
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.4e-34 149.1 229 46.7
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 4.4e-34 149.1 262 45.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 7.4e-34 148.3 233 44.2
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 7.4e-34 148.3 233 44.2
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 9.7e-34 147.9 82 80.5
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.2e-33 146.7 242 45.5
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.3e-33 145.2 161 50.9
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 8.2e-33 144.8 235 48.1
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.1e-32 144.4 183 48.1
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.4e-32 144.1 238 42.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.1e-32 142.5 235 42.6
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 5.3e-32 142.1 240 46.2
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.3e-32 142.1 239 41.4
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 7.0e-32 141.7 147 53.7
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 9.1e-32 141.4 164 48.8
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 9.1e-32 141.4 161 50.9
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-31 140.2 221 43.0
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-31 140.2 221 43.0
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.6e-31 139.8 238 45.4
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.5e-31 139.4 231 40.7
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.5e-31 139.0 263 43.3
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.0e-30 137.9 172 52.9
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.3e-30 137.5 260 38.8
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.3e-30 137.5 238 42.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.3e-30 137.5 73 84.9
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.7e-30 137.1 230 45.2
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 2.2e-30 136.7 244 40.2
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 6.5e-30 135.2 246 44.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.5e-29 134.0 252 43.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 3.2e-29 132.9 259 44.0
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.2e-28 131.0 88 69.3
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.7e-28 129.8 244 41.4
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.6e-28 129.4 233 41.6
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 6.1e-28 128.6 82 69.5
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 1.0e-27 127.9 231 45.9
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.4e-27 127.5 170 43.5
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 6.7e-27 125.2 231 45.5
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.5e-26 124.0 228 41.2
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 4.4e-26 122.5 235 40.0
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.7e-25 120.6 166 48.8
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.2e-25 120.2 238 37.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.8e-25 119.8 230 44.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 6.3e-25 118.6 86 66.3
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.4e-24 117.5 226 39.8
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 1.8e-24 117.1 248 35.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 3.1e-24 116.3 173 43.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 3.1e-24 116.3 173 43.4
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.1e-24 116.3 86 65.1
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.2e-23 114.4 99 61.6
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.6e-23 114.0 173 42.8
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.7e-23 113.2 77 68.8
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 3.5e-23 112.8 221 33.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.8e-22 109.4 79 63.3
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 5.0e-22 109.0 84 66.7
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.5e-21 107.5 67 73.1
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 7.2e-21 105.1 106 49.1
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.8e-19 98.6 200 38.5
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.8e-19 98.2 113 47.8
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.8e-16 90.5 83 51.8
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-16 89.0 160 39.4
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 2.0e-15 87.0 157 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 2.9e-14 83.2 78 52.6
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 2.2e-09 67.0 170 31.8
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.7e-09 66.2 169 32.5
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-08 63.5 91 45.1
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.8e-06 56.2 39 64.1


User provided reference genes

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