Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.0e-301 1039.3 518 100.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-258 895.6 518 85.7
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.8e-258 895.6 518 85.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 4.1e-258 894.4 508 87.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-253 879.0 518 84.2
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 5.1e-253 877.5 519 85.4
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.8e-232 808.1 512 80.7
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-221 772.7 516 77.9
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.3e-200 703.4 518 70.8
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.3e-199 697.6 516 70.7
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 8.1e-198 694.1 523 67.9
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.4e-197 693.3 514 69.3
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 3.4e-196 688.7 524 67.4
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-195 686.0 535 66.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.4e-189 666.8 523 64.1
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.3e-187 660.2 538 63.8
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 6.4e-187 657.9 518 65.4
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 4.1e-186 655.2 518 65.4
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.7e-185 652.5 529 63.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.3e-184 649.4 525 62.9
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 8.6e-184 647.5 534 62.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.5e-183 646.0 523 62.0
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.5e-183 646.0 524 62.6
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 4.3e-183 645.2 523 62.1
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 9.6e-183 644.0 548 61.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 9.6e-183 644.0 548 61.9
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.6e-182 643.3 523 63.5
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.4e-181 640.2 537 63.3
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.9e-181 637.5 529 62.6
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.5e-180 636.7 512 63.5
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 4.4e-180 635.2 553 60.2
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.8e-180 634.8 552 61.8
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 3.8e-179 632.1 523 61.4
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.9e-179 631.7 514 61.3
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 4.9e-179 631.7 534 61.0
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.6e-177 626.7 554 61.2
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 4.3e-175 618.6 531 60.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.6e-175 618.2 513 62.8
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.6e-174 616.7 532 60.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 4.0e-173 612.1 514 59.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.9e-171 605.9 512 62.1
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-167 592.8 514 57.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.3e-166 590.5 509 60.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.6e-166 590.1 519 57.8
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.6e-166 590.1 506 62.3
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.8e-166 589.3 514 58.2
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.8e-163 578.9 526 57.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 4.6e-161 572.0 545 55.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 7.9e-161 571.2 552 57.8
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.3e-160 569.7 510 58.6
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.0e-160 569.3 510 58.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 3.9e-160 568.9 525 57.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.1e-160 568.5 538 55.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 3.3e-159 565.8 528 56.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 3.3e-159 565.8 523 56.6
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.3e-159 565.8 510 57.8
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 4.3e-159 565.5 509 57.2
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.4e-159 564.7 545 56.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.3e-158 563.9 476 61.6
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.8e-158 562.8 512 58.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.0e-155 554.3 522 58.6
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.4e-154 550.4 548 54.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.5e-153 545.8 519 55.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.3e-152 543.9 515 57.3
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.3e-152 543.1 516 56.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.5e-151 539.7 521 55.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.3e-150 537.3 541 51.9
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 3.7e-150 535.8 539 53.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.6e-148 529.6 529 52.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 6.5e-147 525.0 519 52.2
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.9e-146 523.5 524 52.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 5.5e-146 521.9 523 51.6
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.2e-145 520.8 521 55.1
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.1e-145 520.0 514 54.3
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.6e-145 518.8 513 54.0
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 7.9e-145 518.1 522 53.6
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.8e-144 516.9 522 53.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.9e-144 515.8 520 52.1
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.1e-144 515.4 554 51.6
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-143 514.2 513 52.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 3.3e-143 512.7 522 53.3
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 4.3e-143 512.3 524 50.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 5.7e-143 511.9 513 52.8
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-142 510.8 518 52.1
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-142 510.0 516 51.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-142 510.0 520 52.1
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.8e-142 509.6 516 51.9
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 8.2e-142 508.1 522 51.5
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 8.2e-142 508.1 515 53.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.4e-141 506.5 536 51.5
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.3e-141 505.4 520 50.4
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 5.9e-140 501.9 511 53.4
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.0e-139 501.1 518 52.3
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.9e-139 499.6 516 51.9
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 4.2e-138 495.7 505 52.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 7.9e-137 491.5 528 49.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 5.1e-136 488.8 500 53.0
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 5.1e-136 488.8 498 52.4
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.4e-133 480.7 520 49.6
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.4e-133 479.9 555 48.1
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.7e-126 456.1 474 53.4
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.9e-122 443.7 500 48.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 6.1e-121 438.7 508 50.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.3e-120 436.8 527 47.4
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-119 433.3 492 48.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 4.4e-119 432.6 552 45.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.1e-117 426.4 525 46.5
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.2e-116 424.5 512 46.5
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.0e-116 423.7 520 46.2
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.7e-115 420.6 530 44.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.1e-114 417.9 469 50.5
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 5.2e-112 409.1 405 53.8
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.4e-109 400.2 512 43.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.1e-105 385.6 492 44.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 2.3e-104 383.6 518 44.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 2.0e-103 380.6 517 43.5
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.6e-97 360.9 562 41.5
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 3.4e-95 353.2 507 42.0
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.9e-90 337.4 475 41.5
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-88 329.7 504 40.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-87 327.4 504 40.9
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.2e-85 318.5 510 39.6
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.6e-76 289.7 490 37.3
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.1e-75 286.2 461 38.4
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-74 284.3 461 39.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 7.8e-68 262.3 515 34.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-59 235.3 412 37.9
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-57 227.6 455 35.6
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-57 227.6 455 35.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.3e-51 207.6 145 73.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-50 205.3 314 40.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 4.3e-50 203.4 272 45.6
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 7.6e-47 192.6 515 31.1
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.9e-47 192.2 136 65.4
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 7.1e-45 186.0 172 55.2
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.0e-43 182.2 525 27.8
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.9e-38 163.3 452 29.4
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.9e-37 161.4 521 27.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.8e-33 147.5 401 29.7
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 6.5e-30 136.3 442 27.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 7.4e-26 122.9 97 63.9
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-23 114.8 288 33.3
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.6e-23 114.4 421 24.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 7.7e-23 112.8 484 25.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.7e-20 104.4 506 22.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.7e-20 103.6 67 71.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.7e-19 99.8 377 23.3
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 6.7e-19 99.8 86 54.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-18 99.0 198 35.9
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 3.7e-17 94.0 58 67.2
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.2e-15 89.0 60 68.3
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 6.1e-12 76.6 371 20.8
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-12 76.3 82 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.8e-11 75.1 125 35.2
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.8e-08 65.1 61 45.9


User provided reference genes

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