Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 3.5e-73 278.5 173 100.0
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 2.5e-63 245.7 175 79.4
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 9.6e-63 243.8 176 88.6
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 2.8e-62 242.3 175 77.7
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 3.5e-57 225.3 173 83.8
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 6.0e-57 224.6 176 72.2
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 7.9e-57 224.2 175 77.1
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.0e-56 223.8 173 83.2
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.8e-56 223.0 182 71.4
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 2.3e-56 222.6 177 71.2
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 3.9e-56 221.9 175 76.6
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 6.7e-56 221.1 177 73.4
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.1e-55 220.3 177 76.8
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.5e-55 219.9 173 71.1
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.5e-55 219.9 176 70.5
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 1.9e-55 219.5 176 71.0
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 3.7e-54 215.3 181 69.1
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.4e-53 213.4 174 68.4
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 1.4e-53 213.4 180 75.6
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 2.4e-53 212.6 176 69.9
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 2.4e-53 212.6 176 69.9
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 6.9e-53 211.1 174 69.0
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 6.9e-53 211.1 174 69.0
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 1.2e-52 210.3 179 71.5
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.4e-52 208.8 176 69.9
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.5e-52 208.4 176 69.9
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 4.5e-52 208.4 173 73.4
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 5.8e-52 208.0 176 68.8
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 1.0e-51 207.2 173 81.5
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 1.3e-51 206.8 174 68.4
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.3e-51 206.8 174 68.4
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 3.8e-51 205.3 177 67.2
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 1.1e-50 203.8 178 68.5
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 1.1e-50 203.8 174 72.4
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 1.9e-50 203.0 173 65.3
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 2.5e-50 202.6 176 67.6
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 2.5e-50 202.6 175 73.1
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 3.2e-50 202.2 175 65.7
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 3.2e-50 202.2 163 71.2
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 4.2e-50 201.8 174 66.1
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 4.2e-50 201.8 175 67.4
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 9.3e-50 200.7 185 66.5
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 1.2e-49 200.3 176 70.5
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.2e-49 200.3 175 66.3
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.6e-49 199.9 179 68.7
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.6e-49 199.9 173 69.4
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 1.6e-49 199.9 174 70.1
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 2.1e-49 199.5 185 63.8
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 2.7e-49 199.1 176 66.5
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 3.5e-49 198.7 175 66.3
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 3.5e-49 198.7 177 62.7
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 3.5e-49 198.7 177 62.7
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 4.6e-49 198.4 174 64.9
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 6.1e-49 198.0 179 69.3
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 7.9e-49 197.6 115 88.7
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 7.9e-49 197.6 174 64.9
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 7.9e-49 197.6 173 64.7
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 7.9e-49 197.6 176 64.8
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 7.9e-49 197.6 173 64.7
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 7.9e-49 197.6 175 65.7
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 1.0e-48 197.2 174 64.4
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 1.3e-48 196.8 176 65.9
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.8e-48 196.4 175 65.1
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 1.8e-48 196.4 175 65.1
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 2.3e-48 196.1 174 68.4
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 2.3e-48 196.1 174 63.8
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 8.7e-48 194.1 174 63.2
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.1e-47 193.7 121 83.5
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 1.9e-47 193.0 181 65.2
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 1.9e-47 193.0 184 66.3
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.9e-47 193.0 116 85.3
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 1.9e-47 193.0 178 65.2
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 3.3e-47 192.2 173 70.5
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 5.7e-47 191.4 176 63.6
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 1.6e-46 189.9 169 64.5
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.2e-46 189.5 107 88.8
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 2.2e-46 189.5 177 63.3
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 2.8e-46 189.1 178 63.5
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 4.8e-46 188.3 179 61.5
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 4.8e-46 188.3 176 63.6
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 6.3e-46 188.0 180 61.7
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 8.2e-46 187.6 120 80.0
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.4e-45 186.8 175 68.0
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.8e-45 186.4 181 61.3
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.8e-45 186.4 179 60.9
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 2.4e-45 186.0 178 61.2
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 5.3e-45 184.9 175 67.4
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 5.3e-45 184.9 119 80.7
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 9.0e-45 184.1 116 80.2
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 1.5e-44 183.3 174 61.5
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 2.0e-44 183.0 103 91.3
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 2.0e-44 183.0 171 67.3
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 2.6e-44 182.6 172 61.0
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 2.6e-44 182.6 172 61.0
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 2.6e-44 182.6 175 72.0
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 3.4e-44 182.2 110 83.6
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 1.7e-43 179.9 115 79.1
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.7e-43 179.9 111 84.7
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 2.2e-43 179.5 172 60.5
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 2.2e-43 179.5 172 59.9
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 2.2e-43 179.5 110 82.7
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 2.9e-43 179.1 173 61.3
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 3.8e-43 178.7 110 80.9
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 5.0e-43 178.3 115 78.3
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 8.5e-43 177.6 119 76.5
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 8.5e-43 177.6 119 76.5
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 8.5e-43 177.6 119 76.5
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 1.1e-42 177.2 110 80.0
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 1.1e-42 177.2 178 60.1
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 1.9e-42 176.4 110 81.8
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.9e-42 176.4 172 61.6
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 2.5e-42 176.0 172 59.3
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 4.2e-42 175.3 118 77.1
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 7.2e-42 174.5 172 63.4
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 3.4e-36 155.6 110 70.9
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 2.1e-33 146.4 85 84.7
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 7.4e-31 137.9 113 61.1
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 8.2e-30 134.4 121 57.9
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.8e-29 133.3 151 58.3
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 1.8e-29 133.3 119 55.5
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 7.7e-28 127.9 119 55.5
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.7e-27 126.7 83 75.9
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 2.9e-27 125.9 121 55.4
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 2.2e-22 109.8 132 53.0
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 1.1e-21 107.5 105 49.5
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 4.5e-20 102.1 120 45.8
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.5e-18 97.1 78 71.8
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 1.5e-18 97.1 170 56.5
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 2.8e-06 56.2 98 27.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 6.3e-06 55.1 100 28.0


User provided reference genes

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