Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.4e-138 495.0 243 100.0
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 8.4e-91 338.2 212 82.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 7.9e-89 331.6 238 73.1
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 6.2e-86 322.0 236 71.6
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 8.1e-86 321.6 236 71.2
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.5e-71 274.2 254 58.7
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 1.8e-64 250.8 205 63.4
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 2.0e-60 237.3 203 61.6
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 2.6e-60 236.9 214 57.5
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 1.7e-59 234.2 212 57.1
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.4e-56 224.6 245 51.0
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.8e-56 224.2 244 50.8
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.1e-56 222.6 209 55.5
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.1e-56 222.6 209 55.5
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 1.1e-55 221.5 212 55.2
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 2.8e-54 216.9 204 54.9
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 4.8e-54 216.1 210 54.8
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 1.8e-53 214.2 208 52.9
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.0e-52 210.7 207 52.7
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 1.0e-51 208.4 215 51.6
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 1.1e-50 204.9 210 51.0
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 7.2e-50 202.2 241 46.9
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 4.7e-49 199.5 222 50.0
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 8.8e-48 195.3 191 52.9
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.2e-46 190.7 219 50.2
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 4.8e-46 189.5 212 51.4
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 2.4e-45 187.2 251 43.4
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 3.1e-45 186.8 205 51.2
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 4.1e-45 186.4 207 51.7
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 5.3e-45 186.0 209 49.3
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 3.8e-43 179.9 136 63.2
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.5e-42 177.2 160 54.4
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 5.5e-42 176.0 199 46.2
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 7.2e-42 175.6 178 50.0
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 2.1e-41 174.1 214 46.3
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 2.1e-41 174.1 231 42.9
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.6e-41 173.3 234 41.9
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.7e-41 172.9 192 50.0
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 6.8e-40 169.1 213 44.1
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.2e-39 168.3 215 43.7
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 9.8e-39 165.2 211 46.4
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.8e-38 163.7 196 49.5
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 6.3e-38 162.5 191 42.9
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 8.3e-38 162.2 184 44.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.4e-37 161.4 210 42.9
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.4e-37 161.4 210 42.9
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 1.8e-37 161.0 177 48.6
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 5.4e-37 159.5 201 42.8
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 5.4e-37 159.5 181 43.1
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.6e-36 157.9 179 45.3
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 2.2e-35 154.1 188 45.7
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 2.2e-35 154.1 214 42.5
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 2.9e-35 153.7 170 47.1
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 3.2e-34 150.2 176 45.5
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.6e-33 147.9 213 40.8
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 6.1e-33 146.0 172 48.3
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 8.0e-33 145.6 182 44.5
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 4.0e-32 143.3 147 53.1
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 5.2e-32 142.9 198 39.9
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 6.8e-32 142.5 172 47.1
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.5e-31 141.4 185 41.1
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 1.5e-31 141.4 141 52.5
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 2.0e-31 141.0 192 42.2
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 2.6e-31 140.6 173 41.0
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 3.4e-31 140.2 189 40.7
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 5.7e-31 139.4 179 43.6
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.3e-30 138.3 206 37.4
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.2e-30 137.5 141 52.5
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 2.8e-30 137.1 212 40.1
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 6.3e-30 136.0 167 44.9
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 8.3e-30 135.6 141 51.1
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 8.3e-30 135.6 141 51.1
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 8.3e-30 135.6 166 46.4
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 1.4e-29 134.8 141 49.6
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 3.1e-29 133.7 196 43.9
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 7.0e-29 132.5 141 51.1
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.0e-28 131.0 183 42.6
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 3.5e-28 130.2 143 50.3
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 1.9e-26 124.4 160 44.4
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 1.9e-26 124.4 183 41.0
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 3.3e-26 123.6 183 41.0
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 2.3e-24 117.5 179 39.1
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 8.9e-24 115.5 152 45.4
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.2e-23 115.2 193 38.3
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 3.4e-23 113.6 138 44.2
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 3.4e-23 113.6 178 39.3
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 3.7e-22 110.2 190 35.8
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.4e-21 107.5 98 56.1
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 3.5e-20 103.6 153 40.5
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 2.1e-17 94.4 182 31.9
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 6.1e-17 92.8 160 36.9
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 6.8e-16 89.4 125 44.8
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 1.5e-15 88.2 157 35.0
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 9.8e-15 85.5 162 35.8
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 9.8e-15 85.5 162 35.8
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 1.1e-13 82.0 137 34.3
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.4e-13 81.6 131 38.9
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.9e-13 81.3 130 39.2
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 3.2e-13 80.5 131 38.2
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 3.5e-12 77.0 162 30.9
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.1e-08 65.5 74 43.2
Nn1g08105 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.4e-07 60.1 66 45.5
ClCG03G008000 Citrullus lanatus HOM05D002986 ORTHO05D007611 9.8e-07 58.9 173 24.9


User provided reference genes

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