Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.2e-45 186.0 88 100.0
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 8.7e-36 153.3 88 81.8
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.3e-34 149.4 88 80.7
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 8.1e-34 146.7 88 79.5
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.8e-33 145.6 88 79.5
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 2.4e-25 118.6 94 64.9
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 3.1e-25 118.2 94 64.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 5.3e-25 117.5 89 65.2
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.9e-23 111.7 94 62.8
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.4e-23 110.2 95 60.0
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 2.7e-21 105.1 85 62.4
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.1e-21 104.0 94 55.3
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 1.8e-20 102.4 90 57.8
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 8.7e-20 100.1 98 53.1
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 8.7e-20 100.1 94 57.4
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.9e-19 99.0 94 58.5
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.9e-19 99.0 97 53.6
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.5e-19 98.6 86 61.6
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.5e-19 98.6 94 56.4
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 3.3e-19 98.2 94 56.4
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.3e-19 98.2 95 54.7
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 4.3e-19 97.8 93 55.9
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 4.3e-19 97.8 96 53.1
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 5.7e-19 97.4 94 55.3
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 7.4e-19 97.1 94 55.3
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.3e-18 96.3 95 55.8
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.2e-18 95.5 90 54.4
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.8e-18 95.1 105 49.5
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 2.8e-18 95.1 91 53.8
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 4.8e-18 94.4 96 50.0
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 4.8e-18 94.4 95 51.6
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 6.3e-18 94.0 95 50.5
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 8.2e-18 93.6 94 52.1
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.1e-17 93.2 97 50.5
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.4e-17 92.8 86 55.8
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 4.1e-17 91.3 95 49.5
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 9.0e-17 90.1 89 50.6
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.5e-16 89.4 93 51.6
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 2.6e-16 88.6 94 51.1
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.6e-16 88.6 91 51.6
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.5e-16 87.8 94 50.0
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 5.9e-16 87.4 95 47.4
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 5.9e-16 87.4 95 47.4
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 5.9e-16 87.4 94 48.9
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 7.7e-16 87.0 86 57.0
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.0e-15 86.7 94 47.9
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.3e-15 86.3 91 47.3
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.7e-15 85.9 99 53.5
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 1.7e-15 85.9 89 50.6
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-15 85.5 98 50.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 3.8e-15 84.7 90 47.8
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 5.0e-15 84.3 90 52.2
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 8.5e-15 83.6 91 49.5
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.1e-14 83.2 96 52.1
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.1e-14 83.2 91 47.3
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.4e-14 82.8 90 51.1
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 2.5e-14 82.0 95 43.2
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.5e-14 80.9 99 50.5
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.5e-14 80.9 102 49.0
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 5.5e-14 80.9 88 46.6
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.5e-14 80.9 92 47.8
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.5e-14 80.9 94 50.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 5.5e-14 80.9 94 44.7
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 5.5e-14 80.9 94 44.7
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 5.5e-14 80.9 90 52.2
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 7.2e-14 80.5 95 47.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 9.4e-14 80.1 94 47.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 9.4e-14 80.1 89 47.2
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-13 79.3 101 48.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.1e-13 79.0 91 46.2
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 2.1e-13 79.0 90 47.8
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.6e-13 77.8 95 45.3
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.0e-12 76.6 94 43.6
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.0e-12 75.1 93 48.4
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 3.9e-12 74.7 92 47.8
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 3.9e-12 74.7 92 47.8
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 6.7e-12 73.9 92 45.7
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 6.7e-12 73.9 82 47.6
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.0e-11 72.4 92 46.7
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.0e-11 72.4 93 48.4
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.5e-11 72.0 97 43.3
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-11 72.0 88 46.6
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-11 72.0 88 46.6
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 3.3e-11 71.6 91 41.8
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 4.3e-11 71.2 92 47.8
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 9.7e-11 70.1 93 47.3
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 2.2e-10 68.9 93 43.0
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.7e-10 68.2 92 46.7
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 3.7e-10 68.2 92 45.7
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 4.8e-10 67.8 88 40.9
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 6.3e-10 67.4 88 44.3
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 8.2e-10 67.0 93 45.2
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 1.1e-09 66.6 92 44.6
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.1e-09 66.6 93 45.2
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.1e-09 66.6 93 45.2
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.1e-09 66.6 92 44.6
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.4e-09 66.2 81 45.7
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 1.4e-09 66.2 93 43.0
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 1.8e-09 65.9 92 43.5
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 1.8e-09 65.9 95 43.2
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 1.8e-09 65.9 95 43.2
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 1.8e-09 65.9 88 44.3
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.4e-09 65.5 85 42.4
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.1e-09 65.1 88 39.8
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 3.1e-09 65.1 88 38.6
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.1e-09 65.1 88 44.3
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 6.9e-09 63.9 85 43.5
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 6.9e-09 63.9 88 42.0
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 9.1e-09 63.5 92 42.4
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 9.1e-09 63.5 92 42.4
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 9.1e-09 63.5 92 42.4
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 9.1e-09 63.5 92 42.4
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 9.1e-09 63.5 92 42.4
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-08 63.2 89 40.4
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 1.5e-08 62.8 90 44.4
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 2.0e-08 62.4 89 42.7
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 3.4e-08 61.6 84 42.9
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.4e-08 61.6 89 40.4
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 4.5e-08 61.2 95 42.1
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 4.5e-08 61.2 90 37.8
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.9e-08 60.8 85 40.0
Sc21g0002520 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.9e-08 60.8 85 41.2
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 5.9e-08 60.8 67 49.3
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.7e-08 60.5 89 40.4
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.0e-07 60.1 85 41.2
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 1.0e-07 60.1 90 38.9
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 1.3e-07 59.7 94 42.6
QL02p042335 Quercus lobata HOM05D004838 ORTHO05D005373 1.7e-07 59.3 65 53.8
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 2.2e-07 58.9 97 41.2
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 2.9e-07 58.5 86 36.0
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 2.9e-07 58.5 85 35.3
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.8e-07 58.2 101 36.6
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 8.5e-07 57.0 90 38.9
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.1e-06 56.6 77 41.6
Glyma.06G298400 Glycine max HOM05D004838 ORTHO05D005373 1.1e-06 56.6 89 39.3
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.9e-06 55.8 85 38.8
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 2.5e-06 55.5 88 34.1
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.2e-06 54.7 83 44.6
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 4.2e-06 54.7 43 53.5
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 4.2e-06 54.7 86 41.9
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 5.5e-06 54.3 90 40.0


User provided reference genes

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