Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.9e-161 570.9 299 100.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 5.0e-144 514.6 299 92.0
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.5e-143 513.1 299 91.6
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 4.3e-143 511.5 299 90.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.2e-142 510.0 299 90.0
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.1e-142 509.2 299 90.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 8.9e-141 503.8 300 88.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 3.2e-130 468.8 298 82.2
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 2.1e-126 456.1 296 81.1
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.0e-124 449.5 300 78.7
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 2.6e-124 449.1 293 82.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 3.4e-124 448.7 302 79.1
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-123 446.8 292 80.1
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-123 446.8 292 80.1
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.7e-123 446.4 295 80.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.8e-123 445.3 292 79.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 5.4e-122 441.4 297 76.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.6e-121 439.9 297 78.1
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.7e-121 439.1 297 77.1
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 7.8e-121 437.6 292 78.4
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 7.8e-121 437.6 297 79.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.3e-120 436.8 292 79.1
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 8.7e-120 434.1 296 78.7
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.5e-119 432.6 299 76.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.3e-119 432.2 297 77.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.3e-119 432.2 297 77.4
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 3.3e-119 432.2 300 77.7
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 5.6e-119 431.4 298 76.5
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.3e-118 430.3 293 78.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.3e-118 430.3 293 78.5
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.6e-118 429.9 308 76.6
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.6e-118 429.9 297 77.1
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.6e-118 429.9 300 77.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.6e-118 428.7 295 76.9
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 6.2e-118 427.9 300 74.7
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.1e-117 427.2 292 77.1
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.8e-117 426.4 295 79.3
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.4e-117 426.0 298 77.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.4e-117 426.0 298 77.2
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.4e-117 426.0 292 76.7
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 5.3e-117 424.9 298 76.5
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 5.3e-117 424.9 292 78.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.0e-116 422.9 301 76.1
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.0e-116 422.9 288 78.8
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.4e-116 422.2 300 75.7
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 9.9e-116 420.6 294 76.2
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.3e-115 420.2 292 76.0
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.9e-115 419.1 296 76.7
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.8e-115 418.7 297 75.1
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 4.9e-115 418.3 289 77.9
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 8.4e-115 417.5 301 75.1
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 7.1e-114 414.5 296 75.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.3e-114 414.1 295 75.3
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.2e-113 413.7 291 78.4
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.6e-113 413.3 299 74.6
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 2.7e-113 412.5 296 74.3
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.5e-113 412.1 294 75.2
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.5e-113 412.1 297 74.4
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.6e-113 411.8 296 74.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 6.0e-113 411.4 286 75.5
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 3.0e-112 409.1 292 75.7
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 3.0e-112 409.1 275 77.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.9e-112 408.7 297 73.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 6.7e-112 407.9 296 74.3
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 8.7e-112 407.5 306 74.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.1e-111 407.1 296 75.0
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.5e-111 406.8 283 76.0
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.5e-111 406.8 299 73.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.9e-111 406.4 291 74.6
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.9e-111 406.4 299 73.9
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.5e-111 406.0 289 75.8
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 9.6e-111 404.1 287 75.6
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 9.6e-111 404.1 299 73.2
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 9.6e-111 404.1 310 70.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.6e-110 403.3 275 78.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.6e-110 403.3 275 78.2
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.6e-110 403.3 239 85.8
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 2.1e-110 402.9 296 74.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.1e-110 402.9 300 74.0
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.1e-110 402.9 329 71.1
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 2.8e-110 402.5 299 70.2
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 2.8e-110 402.5 295 75.6
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 6.2e-110 401.4 293 74.1
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 6.2e-110 401.4 293 73.7
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 6.2e-110 401.4 354 66.1
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 8.1e-110 401.0 348 65.5
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.1e-109 400.6 325 69.8
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.8e-109 399.8 292 72.9
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.8e-109 399.8 292 72.9
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.8e-109 399.8 292 72.9
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.8e-109 399.8 259 80.3
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.4e-109 399.4 348 65.5
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 5.3e-109 398.3 263 78.3
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 9.0e-109 397.5 295 73.9
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 9.0e-109 397.5 286 73.4
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.2e-108 397.1 294 73.8
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.2e-108 397.1 293 74.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.5e-108 396.7 292 72.9
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.5e-108 396.7 292 72.9
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.5e-108 396.7 292 74.7
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 3.4e-108 395.6 299 71.9
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 4.5e-108 395.2 259 80.3
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 5.8e-108 394.8 289 75.8
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 7.6e-108 394.4 300 71.3
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.7e-107 393.3 300 70.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 2.9e-107 392.5 294 72.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.9e-107 392.5 288 75.3
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 6.4e-107 391.3 293 73.4
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.6e-105 386.7 295 70.2
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 4.6e-105 385.2 301 70.1
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.8e-104 383.3 299 69.2
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.6e-102 376.7 297 69.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 4.8e-102 375.2 301 68.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 4.8e-102 375.2 294 69.0
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 3.1e-101 372.5 234 82.9
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 5.3e-101 371.7 294 68.7
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.7e-99 366.7 353 60.9
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 2.2e-99 366.3 238 80.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.9e-99 365.2 232 80.6
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 6.5e-99 364.8 299 68.2
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.1e-98 364.0 272 72.4
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.6e-97 360.1 331 62.8
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 8.7e-96 354.4 229 79.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 5.7e-95 351.7 234 82.1
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.1e-93 347.4 297 66.3
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.4e-93 347.1 228 78.9
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.0e-93 344.4 267 68.5
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.2e-90 335.5 298 64.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 5.1e-88 328.6 231 76.2
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 7.7e-84 314.7 221 76.0
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.0e-83 312.0 295 59.3
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.7e-81 305.4 230 67.0
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.7e-81 305.4 231 71.4
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.0e-80 304.3 230 71.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.0e-80 302.8 225 69.3
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 7.4e-79 298.1 210 70.0
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 9.7e-79 297.7 201 73.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.3e-78 297.4 184 84.8
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-74 284.3 266 62.0
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 3.2e-74 282.7 265 61.9
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 3.6e-73 279.3 187 78.6
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.2e-70 270.0 198 72.7
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.6e-55 219.9 181 66.9
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 4.4e-55 219.2 232 50.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 7.5e-55 218.4 226 51.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.1e-50 204.5 150 71.3
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.8e-48 197.2 236 47.5
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.0e-40 171.4 162 55.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.0e-40 169.5 220 43.6
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 4.7e-25 119.4 287 36.2
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 6.8e-24 115.5 69 87.0
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.1e-21 108.2 59 91.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.1e-20 104.0 63 87.3
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 3.6e-17 93.2 121 50.4
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 4.6e-12 76.3 48 72.9
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.1e-10 71.6 56 67.9
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 2.9e-06 57.0 29 86.2


User provided reference genes

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