Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.4e-57 226.1 118 100.0
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.5e-40 168.3 120 79.2
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 9.6e-30 133.7 123 62.6
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 9.6e-30 133.7 123 62.6
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.1e-29 132.5 123 61.8
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.0e-27 125.9 119 65.5
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.0e-27 125.9 119 64.7
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.9e-25 119.4 109 62.4
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.4e-25 119.0 116 65.5
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 3.3e-22 108.6 117 58.1
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-21 105.9 118 57.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 2.8e-21 105.5 122 58.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.8e-21 104.8 117 55.6
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 4.8e-21 104.8 124 54.8
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 4.8e-21 104.8 122 58.2
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 6.2e-21 104.4 119 59.7
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 8.1e-21 104.0 108 55.6
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.1e-20 103.6 124 54.0
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.8e-20 102.8 118 58.5
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 4.0e-20 101.7 109 57.8
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 5.3e-20 101.3 104 54.8
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 6.9e-20 100.9 118 55.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.9e-20 100.9 118 55.9
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 9.0e-20 100.5 122 57.4
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 9.0e-20 100.5 104 53.8
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.5e-19 98.2 120 55.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 5.8e-19 97.8 106 53.8
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 7.6e-19 97.4 125 48.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 7.6e-19 97.4 104 53.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 9.9e-19 97.1 126 50.8
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.3e-18 96.7 129 48.8
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.9e-18 95.5 116 52.6
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 3.8e-18 95.1 129 46.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 4.9e-18 94.7 112 55.4
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 8.4e-18 94.0 128 46.9
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 2.4e-17 92.4 127 47.2
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 5.4e-17 91.3 119 48.7
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-16 89.0 104 52.9
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.7e-16 89.0 115 48.7
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 6.0e-16 87.8 125 50.4
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.0e-15 87.0 121 46.3
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.3e-15 86.7 120 46.7
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 6.7e-15 84.3 50 86.0
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 6.7e-15 84.3 124 47.6
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.7e-15 84.0 87 57.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 1.1e-14 83.6 116 46.6
Gohir.D04G146551 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.5e-14 83.2 84 57.1
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-14 82.8 88 56.8
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-14 82.8 88 56.8
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 7.4e-14 80.9 108 42.6
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.4e-14 80.9 87 56.3
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.4e-14 80.9 87 56.3
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 2.8e-13 79.0 112 41.1
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.2e-13 77.8 119 47.1
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 6.2e-13 77.8 115 45.2
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 8.1e-13 77.4 103 51.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.1e-12 77.0 68 67.6
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 1.4e-12 76.6 71 60.6
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 1.4e-12 76.6 116 52.6
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 6.9e-12 74.3 64 68.8
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.5e-11 73.2 130 43.8
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.0e-11 72.8 49 69.4
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.6e-11 72.4 122 44.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.5e-11 71.6 69 52.2
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 5.8e-11 71.2 61 62.3
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 5.8e-11 71.2 68 58.8
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 7.6e-11 70.9 110 50.9
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 9.9e-11 70.5 101 48.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.3e-10 70.1 123 44.7
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-10 69.7 61 62.3
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.2e-10 69.3 117 46.2
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 2.2e-10 69.3 59 66.1
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 3.8e-10 68.6 61 55.7
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 3.8e-10 68.6 59 67.8
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 8.4e-10 67.4 62 59.7
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.1e-09 67.0 126 36.5
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.4e-09 66.6 52 67.3
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 1.9e-09 66.2 50 68.0
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.4e-09 65.9 69 59.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.4e-09 65.9 69 59.4
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.2e-09 65.5 47 72.3
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.2e-09 65.1 117 38.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 5.5e-09 64.7 95 47.4
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 7.1e-09 64.3 116 38.8
Nn1g06910 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-08 63.2 113 37.2
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-08 62.8 68 50.0
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.7e-08 62.4 46 67.4
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 3.5e-08 62.0 47 59.6
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 4.6e-08 61.6 86 43.0
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 6.0e-08 61.2 63 47.6
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.3e-07 60.1 65 56.9
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.3e-07 60.1 106 35.8
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 1.8e-07 59.7 72 54.2
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.3e-07 59.3 60 45.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.3e-07 59.3 131 34.4
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.3e-07 59.3 93 38.7
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.0e-07 58.9 66 47.0
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 3.9e-07 58.5 111 39.6
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 3.9e-07 58.5 143 33.6
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 8.7e-07 57.4 46 56.5
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.5e-06 56.6 90 34.4
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 1.5e-06 56.6 60 53.3
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-06 56.6 66 40.9
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.9e-06 56.2 56 50.0
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.3e-06 55.5 40 67.5
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 4.3e-06 55.1 105 39.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.3e-06 55.1 128 32.0
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 4.3e-06 55.1 46 56.5
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 7.4e-06 54.3 136 30.9
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 7.4e-06 54.3 53 56.6
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 7.4e-06 54.3 53 56.6
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 7.4e-06 54.3 57 49.1
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 7.4e-06 54.3 86 41.9
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 9.6e-06 53.9 76 43.4


User provided reference genes

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