Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G165100 Theobroma cacao HOM05D000191 ORTHO05D020535 2.6e-59 231.9 118 100.0
Thecc.05G077400 Theobroma cacao HOM05D000191 ORTHO05D000122 9.5e-46 186.8 99 97.0
Gohir.A09G142900 Gossypium hirsutum HOM05D000191 ORTHO05D000122 1.1e-30 136.7 96 76.0
Gorai.006G159600 Gossypium raimondii HOM05D000191 ORTHO05D000122 1.5e-30 136.3 96 74.0
Gohir.D09G139100 Gossypium hirsutum HOM05D000191 ORTHO05D000122 5.6e-30 134.4 96 72.9
Gohir.D01G199900 Gossypium hirsutum HOM05D000191 ORTHO05D000122 7.3e-30 134.0 93 72.0
Gorai.002G244600 Gossypium raimondii HOM05D000191 ORTHO05D000122 7.3e-30 134.0 93 72.0
Gohir.A01G211100 Gossypium hirsutum HOM05D000191 ORTHO05D000122 8.1e-29 130.6 93 69.9
Duzib093G0748 Durio zibethinus HOM05D000191 ORTHO05D000122 6.9e-28 127.5 99 71.7
Haze_19504 Corylus avellana HOM05D000191 ORTHO05D000122 3.5e-16 88.6 75 61.3
Ciclev10011407m.g Citrus clementina HOM05D000191 ORTHO05D000122 1.8e-15 86.3 89 53.9
Cfa016501 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.9e-14 82.8 74 60.8
Cfa016503 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.9e-14 82.8 74 60.8
Thecc.05G077600 Theobroma cacao HOM05D000191 ORTHO05D000122 2.5e-14 82.4 83 56.6
ECA248G1520 Erigeron canadensis HOM05D000191 ORTHO05D000122 2.8e-13 79.0 93 47.3
arahy.Tifrunner.gnm1.ann1.70B70G Arachis hypogaea HOM05D000191 ORTHO05D000122 4.8e-13 78.2 64 60.9
arahy.Tifrunner.gnm1.ann1.GQ7AND Arachis hypogaea HOM05D000191 ORTHO05D000122 4.8e-13 78.2 64 60.9
THA.LOC104816382 Tarenaya hassleriana HOM05D000191 ORTHO05D000122 4.8e-13 78.2 107 40.2
Duzib106G0544 Durio zibethinus HOM05D000191 ORTHO05D000122 8.1e-13 77.4 92 52.2
TPR.G5646 Trifolium pratense HOM05D000191 ORTHO05D000122 8.1e-13 77.4 68 57.4
Psat6g077560 Pisum sativum HOM05D000191 ORTHO05D000122 1.1e-12 77.0 67 59.7
Potri.006G118000 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.1e-12 77.0 64 56.2
Cpa.g.sc5.111 Carica papaya HOM05D000191 ORTHO05D000122 1.4e-12 76.6 112 47.3
CiPaw.09G006400 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.8e-12 76.3 78 51.3
Dinv35846 Davidia involucrata HOM05D000191 ORTHO05D000122 1.8e-12 76.3 94 48.9
Duzib093G0293 Durio zibethinus HOM05D000191 ORTHO05D000122 1.8e-12 76.3 95 47.4
Medtr1g061760 Medicago truncatula HOM05D000191 ORTHO05D000122 1.8e-12 76.3 94 51.1
Dinv35847 Davidia involucrata HOM05D000191 ORTHO05D000122 2.4e-12 75.9 94 47.9
Gorai.002G244500 Gossypium raimondii HOM05D000191 ORTHO05D000122 2.4e-12 75.9 44 77.3
Lj5g0006074 Lotus japonicus HOM05D000191 ORTHO05D000122 3.1e-12 75.5 92 46.7
ClCG04G009640 Citrullus lanatus HOM05D000191 ORTHO05D000122 5.3e-12 74.7 70 54.3
Dinv37372 Davidia involucrata HOM05D000191 ORTHO05D000122 6.9e-12 74.3 97 44.3
Lj1g0005834 Lotus japonicus HOM05D000191 ORTHO05D000122 6.9e-12 74.3 100 45.0
Sed0002521 Sechium edule HOM05D000191 ORTHO05D000122 6.9e-12 74.3 72 51.4
Actinidia39862 Actinidia chinensis HOM05D000191 ORTHO05D000122 9.0e-12 73.9 84 51.2
Duzib093G0587 Durio zibethinus HOM05D000191 ORTHO05D000122 1.2e-11 73.6 50 72.0
COL.COLO4_22273 Corchorus olitorius HOM05D000191 ORTHO05D000122 2.0e-11 72.8 93 44.1
Gohir.A01G211000 Gossypium hirsutum HOM05D000191 ORTHO05D000122 2.0e-11 72.8 61 59.0
Lsat_1_v5_gn_1_51001 Lactuca sativa HOM05D000191 ORTHO05D000122 2.0e-11 72.8 62 59.7
MELO3C024503.2 Cucumis melo HOM05D000191 ORTHO05D000122 2.6e-11 72.4 99 44.4
Ca_11603_v3 Cicer arietinum L. HOM05D000191 ORTHO05D000122 3.4e-11 72.0 44 77.3
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 4.5e-11 71.6 94 43.6
Glyma.10G064200 Glycine max HOM05D000191 ORTHO05D000122 4.5e-11 71.6 90 45.6
Ca_08948_v3 Cicer arietinum L. HOM05D000191 ORTHO05D000122 5.8e-11 71.2 82 47.6
Ca_12341_v3 Cicer arietinum L. HOM05D000191 ORTHO05D000122 5.8e-11 71.2 67 58.2
DCAR_015021 Daucus carota HOM05D000191 ORTHO05D000122 5.8e-11 71.2 61 55.7
Hma1.2p1_0084F.1_g042940 Hydrangea macrophylla HOM05D000191 ORTHO05D000122 5.8e-11 71.2 122 40.2
Hma1.2p1_1578F.1_g291730 Hydrangea macrophylla HOM05D000191 ORTHO05D000122 5.8e-11 71.2 122 40.2
CsaV3_6G040280 Cucumis sativus L. HOM05D000191 ORTHO05D000122 7.6e-11 70.9 93 45.2
Phvul.001G184500 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 7.6e-11 70.9 44 72.7
Phvul.007G225300 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 7.6e-11 70.9 104 46.2
PGR142G1805 Punica granatum HOM05D000191 ORTHO05D000122 7.6e-11 70.9 91 46.2
TPR.G5658 Trifolium pratense HOM05D000191 ORTHO05D000122 7.6e-11 70.9 44 72.7
MSTRG.5792 Avicennia marina HOM05D000191 ORTHO05D000122 9.9e-11 70.5 81 44.4
Manes.08G017900 Manihot esculenta HOM05D000191 ORTHO05D000122 1.3e-10 70.1 53 58.5
Medtr1g061790 Medicago truncatula HOM05D000191 ORTHO05D020535 1.3e-10 70.1 43 72.1
Aa31LG1G21470 Aethionema arabicum HOM05D000191 ORTHO05D000122 1.7e-10 69.7 97 40.2
AL6G13370 Arabidopsis lyrata HOM05D000191 ORTHO05D000122 1.7e-10 69.7 84 46.4
Carub.0006s0273 Capsella rubella HOM05D000191 ORTHO05D000122 1.7e-10 69.7 94 42.6
Sed0005372 Sechium edule HOM05D000191 ORTHO05D000122 2.2e-10 69.3 75 52.0
arahy.Tifrunner.gnm1.ann1.ZY4GTF Arachis hypogaea HOM05D000191 ORTHO05D000122 2.9e-10 68.9 104 44.2
Glyma.03G189100 Glycine max HOM05D000191 ORTHO05D000122 3.8e-10 68.6 74 50.0
Lj1g0022352 Lotus japonicus HOM05D000191 ORTHO05D000122 3.8e-10 68.6 101 42.6
Lalb_Chr01g0018481 Lupinus albus HOM05D000191 ORTHO05D000122 3.8e-10 68.6 77 50.6
MD14G1095400 Malus domestica HOM05D000191 ORTHO05D000122 4.9e-10 68.2 61 54.1
CSS0020647 Camellia sinensis var. sinensis HOM05D000191 ORTHO05D000122 6.4e-10 67.8 78 48.7
CSS0038879 Camellia sinensis var. sinensis HOM05D000191 ORTHO05D000122 6.4e-10 67.8 78 48.7
Lj1g0022092 Lotus japonicus HOM05D000191 ORTHO05D000122 6.4e-10 67.8 87 51.7
Sc02g0001280 Simmondsia chinensis HOM05D000191 ORTHO05D000122 6.4e-10 67.8 75 48.0
VMungo1383G1248 Vigna mungo HOM05D000191 ORTHO05D000122 6.4e-10 67.8 44 70.5
Glyma.19G189300 Glycine max HOM05D000191 ORTHO05D000122 8.4e-10 67.4 82 48.8
MD12G1101000 Malus domestica HOM05D000191 ORTHO05D000122 8.4e-10 67.4 93 43.0
vmacro07347 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 8.4e-10 67.4 80 46.2
Ah.08g211150 Amaranthus hybridus HOM05D000191 ORTHO05D000122 1.1e-09 67.0 67 52.2
AT5G03795 Arabidopsis thaliana HOM05D000191 ORTHO05D000122 1.1e-09 67.0 92 44.6
A10p32280 Brassica napus HOM05D000191 ORTHO05D000122 1.1e-09 67.0 91 44.0
C09p73120 Brassica napus HOM05D000191 ORTHO05D000122 1.1e-09 67.0 91 45.1
BolC9t60046H Brassica oleracea HOM05D000191 ORTHO05D000122 1.1e-09 67.0 91 45.1
BraA10t45271Z Brassica rapa HOM05D000191 ORTHO05D000122 1.1e-09 67.0 91 44.0
HanXRQChr11g0350811 Helianthus annuus HOM05D000191 ORTHO05D000122 1.1e-09 67.0 93 41.9
Lj2A125T57 Lonicera japonica HOM05D000191 ORTHO05D000122 1.1e-09 67.0 83 45.8
SalBow3G4153 Salvia bowleyana HOM05D000191 ORTHO05D000122 1.1e-09 67.0 71 52.1
TAR623G0237 Trochodendron aralioides HOM05D000191 ORTHO05D000122 1.1e-09 67.0 93 44.1
arahy.Tifrunner.gnm1.ann1.W9Z1YB Arachis hypogaea HOM05D000191 ORTHO05D000122 1.4e-09 66.6 104 44.2
Lalb_Chr21g0315321 Lupinus albus HOM05D000191 ORTHO05D000122 1.4e-09 66.6 44 68.2
A03p01390 Brassica napus HOM05D000191 ORTHO05D000122 1.9e-09 66.2 93 43.0
C03p01730 Brassica napus HOM05D000191 ORTHO05D000122 1.9e-09 66.2 92 44.6
BolC3t12728H Brassica oleracea HOM05D000191 ORTHO05D000122 1.9e-09 66.2 92 44.6
BraA03t09518Z Brassica rapa HOM05D000191 ORTHO05D000122 1.9e-09 66.2 92 44.6
CSS0030003 Camellia sinensis var. sinensis HOM05D000191 ORTHO05D000122 1.9e-09 66.2 78 46.2
AUR62037916 Chenopodium quinoa HOM05D000191 ORTHO05D000122 1.9e-09 66.2 92 41.3
AUR62040167 Chenopodium quinoa HOM05D000191 ORTHO05D000122 1.9e-09 66.2 92 41.3
Atru.chr8.1684 Acer truncatum HOM05D000191 ORTHO05D000122 2.4e-09 65.9 63 55.6
Atru.chr8.1690 Acer truncatum HOM05D000191 ORTHO05D000122 2.4e-09 65.9 63 55.6
BcaC06g32087 Brassica carinata HOM05D000191 ORTHO05D000122 2.4e-09 65.9 91 41.8
AUR62040168 Chenopodium quinoa HOM05D000191 ORTHO05D000122 2.4e-09 65.9 66 51.5
MELO3C033024.2 Cucumis melo HOM05D000191 ORTHO05D020535 2.4e-09 65.9 66 50.0
Hma1.2p1_0084F.1_g042950 Hydrangea macrophylla HOM05D000191 ORTHO05D000122 2.4e-09 65.9 46 60.9
AUR62037917 Chenopodium quinoa HOM05D000191 ORTHO05D000122 3.2e-09 65.5 57 54.4
MELO3C021559.2 Cucumis melo HOM05D000191 ORTHO05D020535 3.2e-09 65.5 78 46.2
Glyma.13G148700 Glycine max HOM05D000191 ORTHO05D000122 3.2e-09 65.5 81 46.9
QL07p041120 Quercus lobata HOM05D000191 ORTHO05D000122 3.2e-09 65.5 99 44.4
VMungo0720G0395 Vigna mungo HOM05D000191 ORTHO05D000122 3.2e-09 65.5 44 65.9
Lj3C946G4 Lonicera japonica HOM05D000191 ORTHO05D000122 4.2e-09 65.1 44 70.5
Peaxi162Scf00146g00413 Petunia axillaris HOM05D000191 ORTHO05D000122 4.2e-09 65.1 78 46.2
Psat3g037560 Pisum sativum HOM05D000191 ORTHO05D000122 4.2e-09 65.1 81 48.1
Atru.chr8.1685 Acer truncatum HOM05D000191 ORTHO05D000122 5.5e-09 64.7 46 63.0
Actinidia39863 Actinidia chinensis HOM05D000191 ORTHO05D000122 5.5e-09 64.7 52 57.7
CARHR209470 Cardamine hirsuta HOM05D000191 ORTHO05D000122 7.1e-09 64.3 87 40.2
Thhalv10016080m.g Eutrema salsugineum HOM05D000191 ORTHO05D000122 7.1e-09 64.3 76 43.4
Glyma.10G064300 Glycine max HOM05D000191 ORTHO05D000122 7.1e-09 64.3 75 45.3
Sopen09g003510 Solanum pennellii HOM05D000191 ORTHO05D000122 7.1e-09 64.3 63 57.1
PGSC0003DMG401012985 Solanum tuberosum HOM05D000191 ORTHO05D000122 7.1e-09 64.3 92 44.6
BcaB01g05786 Brassica carinata HOM05D000191 ORTHO05D000122 9.3e-09 63.9 50 56.0
Migut.J00488 Erythranthe guttata HOM05D000191 ORTHO05D000122 9.3e-09 63.9 70 44.3
Solyc09g008710.1 Solanum lycopersicum HOM05D000191 ORTHO05D020535 9.3e-09 63.9 64 54.7
BcaC06g32086 Brassica carinata HOM05D000191 ORTHO05D000122 1.2e-08 63.5 91 44.0
Glyma.13G148900 Glycine max HOM05D000191 ORTHO05D000122 1.2e-08 63.5 96 43.8
Nitab4.5_0001173g0070 Nicotiana tabacum HOM05D000191 ORTHO05D000122 1.2e-08 63.5 92 43.5
Peaxi162Scf00500g00310 Petunia axillaris HOM05D000191 ORTHO05D000122 1.2e-08 63.5 63 54.0
Rhsim03G0084900 Rhododendron simsii HOM05D000191 ORTHO05D000122 1.2e-08 63.5 79 44.3
CANSAT80G1199 Cannabis sativa HOM05D000191 ORTHO05D000122 1.6e-08 63.2 93 41.9
Lsat_1_v5_gn_2_24400 Lactuca sativa HOM05D000191 ORTHO05D000122 1.6e-08 63.2 93 36.6
RcHm_v2.0_Chr3g0471641 Rosa chinensis HOM05D000191 ORTHO05D000122 1.6e-08 63.2 95 38.9
Prupe.7G121600 Prunus persica HOM05D000191 ORTHO05D000122 2.1e-08 62.8 52 57.7
Nn2g13926 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.7e-08 62.4 49 61.2
SGA_v2.0_scaffold277G46720 Striga asiatica HOM05D000191 ORTHO05D000122 2.7e-08 62.4 111 36.0
Aqoxy4G02314 Aquilegia oxysepala HOM05D000191 ORTHO05D000122 4.6e-08 61.6 90 45.6
MELO3C003720.2 Cucumis melo HOM05D000191 ORTHO05D020535 4.6e-08 61.6 68 45.6
Sp6g38920 Schrenkiella parvula HOM05D000191 ORTHO05D000122 4.6e-08 61.6 78 39.7
TWI77G0461 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 4.6e-08 61.6 113 38.9
Oeu038881.1 Olea europaea HOM05D000191 ORTHO05D000122 6.0e-08 61.2 103 35.9
SalBow5G0251 Salvia bowleyana HOM05D000191 ORTHO05D000122 6.0e-08 61.2 53 60.4
Nitab4.5_0000680g0140 Nicotiana tabacum HOM05D000191 ORTHO05D000122 7.9e-08 60.8 63 50.8
PGSC0003DMG400008396 Solanum tuberosum HOM05D000191 ORTHO05D000122 7.9e-08 60.8 63 47.6
FvH4_2g02352 Fragaria vesca HOM05D000191 ORTHO05D020535 1.0e-07 60.5 89 44.9
Solyc10g085730.3 Solanum lycopersicum HOM05D000191 ORTHO05D000122 1.0e-07 60.5 63 49.2
GSVIVG01030134001 Vitis vinifera HOM05D000191 ORTHO05D000122 1.0e-07 60.5 50 62.0
Actinidia11314 Actinidia chinensis HOM05D000191 ORTHO05D000122 1.3e-07 60.1 63 52.4
Peaxi162Scf00581g00051 Petunia axillaris HOM05D000191 ORTHO05D000122 1.3e-07 60.1 53 54.7
CiPaw.10G002900 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.8e-07 59.7 68 52.9
Nitab4.5_0009127g0020 Nicotiana tabacum HOM05D000191 ORTHO05D000122 2.3e-07 59.3 112 33.0
SHI27748 Sapria himalayana HOM05D000191 ORTHO05D000122 2.3e-07 59.3 48 56.2
Oeu017006.1 Olea europaea HOM05D000191 ORTHO05D000122 3.0e-07 58.9 104 38.5
SGA_v2.0_scaffold40G15441 Striga asiatica HOM05D000191 ORTHO05D000122 3.9e-07 58.5 73 41.1
TWI18G0504 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 3.9e-07 58.5 60 55.0
MBI01_g24439_MAGBIO Magnolia biondii HOM05D000191 ORTHO05D000122 6.7e-07 57.8 51 60.8
CAN.G541.21 Capsicum annuum HOM05D000191 ORTHO05D000122 8.7e-07 57.4 102 34.3
Dinv05333 Davidia involucrata HOM05D000191 ORTHO05D000122 8.7e-07 57.4 83 44.6
FAN02G0366 Fragaria x ananassa HOM05D000191 ORTHO05D000122 8.7e-07 57.4 64 43.8
Medtr7g103260 Medicago truncatula HOM05D000191 ORTHO05D000122 8.7e-07 57.4 76 43.4
TAR627G0915 Trochodendron aralioides HOM05D000191 ORTHO05D000122 8.7e-07 57.4 50 58.0
Atru.chr6.3441 Acer truncatum HOM05D000191 ORTHO05D000122 1.1e-06 57.0 49 59.2
CAN.G766.3 Capsicum annuum HOM05D000191 ORTHO05D000122 1.1e-06 57.0 51 49.0
FvH4_2g02430 Fragaria vesca HOM05D000191 ORTHO05D000122 1.1e-06 57.0 86 44.2
FvH4_6g17390 Fragaria vesca HOM05D000191 ORTHO05D000122 1.5e-06 56.6 76 40.8
FAN14G2310 Fragaria x ananassa HOM05D000191 ORTHO05D000122 1.5e-06 56.6 76 40.8
Nn6g35115 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.9e-06 56.2 43 62.8
Nn6g35133 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.9e-06 56.2 43 62.8
RcHm_v2.0_Chr6g0246291 Rosa chinensis HOM05D000191 ORTHO05D000122 1.9e-06 56.2 69 47.8
PGSC0003DMG400017704 Solanum tuberosum HOM05D000191 ORTHO05D000122 1.9e-06 56.2 50 56.0
TPR.G31498 Trifolium pratense HOM05D000191 ORTHO05D000122 1.9e-06 56.2 81 40.7
Aqoxy1G01007 Aquilegia oxysepala HOM05D000191 ORTHO05D000122 2.5e-06 55.8 64 53.1
FAN09G2128 Fragaria x ananassa HOM05D000191 ORTHO05D000122 2.5e-06 55.8 64 43.8
FAN09G4129 Fragaria x ananassa HOM05D000191 ORTHO05D000122 2.5e-06 55.8 64 43.8
Peaxi162Scf00110g00913 Petunia axillaris HOM05D000191 ORTHO05D000122 2.5e-06 55.8 68 42.6
DCAR_008753 Daucus carota HOM05D000191 ORTHO05D000122 3.3e-06 55.5 90 43.3
FAN05G0030 Fragaria x ananassa HOM05D000191 ORTHO05D000122 3.3e-06 55.5 73 42.5
Medtr7g103270 Medicago truncatula HOM05D000191 ORTHO05D000122 3.3e-06 55.5 46 56.5
Peaxi162Scf00286g00447 Petunia axillaris HOM05D000191 ORTHO05D000122 3.3e-06 55.5 48 60.4
Prupe.4G281300 Prunus persica HOM05D000191 ORTHO05D000122 3.3e-06 55.5 77 44.2
CAN.G1214.4 Capsicum annuum HOM05D000191 ORTHO05D000122 4.3e-06 55.1 50 54.0
PSO063G3179 Papaver somniferum HOM05D000191 ORTHO05D000122 4.3e-06 55.1 91 33.0
unitig_27.g25391 Utricularia gibba HOM05D000191 ORTHO05D000122 4.3e-06 55.1 41 53.7
vmacro12052 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 4.3e-06 55.1 83 41.0
DCAR_012743 Daucus carota HOM05D000191 ORTHO05D000122 5.6e-06 54.7 86 44.2
Nitab4.5_0005601g0010 Nicotiana tabacum HOM05D000191 ORTHO05D000122 5.6e-06 54.7 50 52.0
PGR031G0066 Punica granatum HOM05D000191 ORTHO05D000122 5.6e-06 54.7 75 37.3
Duzib211G0119 Durio zibethinus HOM05D000191 ORTHO05D000122 7.4e-06 54.3 50 56.0
Lj1A801T71 Lonicera japonica HOM05D000191 ORTHO05D022140 7.4e-06 54.3 50 56.0
MD15G1138400 Malus domestica HOM05D000191 ORTHO05D000122 7.4e-06 54.3 50 56.0
QL09p001444 Quercus lobata HOM05D000191 ORTHO05D000122 7.4e-06 54.3 50 56.0
PGSC0003DMG400017389 Solanum tuberosum HOM05D000191 ORTHO05D000122 7.4e-06 54.3 49 55.1
Rhsim06G0179700 Rhododendron simsii HOM05D000191 ORTHO05D000122 9.6e-06 53.9 80 45.0
Rhsim06G0180200 Rhododendron simsii HOM05D000191 ORTHO05D000122 9.6e-06 53.9 80 45.0


User provided reference genes

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