Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 1.3e-40 170.2 165 100.0
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.3e-21 107.1 63 82.5
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.6e-19 100.1 165 73.3
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 2.1e-19 99.8 60 80.0
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 2.8e-19 99.4 60 81.7
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 4.8e-19 98.6 64 75.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.1e-19 97.8 58 82.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.8e-18 96.7 63 79.4
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.8e-18 96.7 163 66.3
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.8e-18 96.7 63 79.4
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 6.9e-18 94.7 58 81.0
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.9e-18 94.7 166 52.4
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 9.0e-18 94.4 163 65.6
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 4.5e-17 92.0 55 78.2
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 4.5e-17 92.0 67 73.1
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 1.7e-16 90.1 57 77.2
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 2.9e-16 89.4 63 76.2
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 2.9e-16 89.4 63 74.6
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 8.4e-16 87.8 63 73.0
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 8.4e-16 87.8 62 72.6
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.1e-15 87.4 64 71.9
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.4e-15 87.0 73 68.5
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.9e-15 86.7 64 73.4
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.9e-15 86.7 61 73.8
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 2.4e-15 86.3 60 70.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.4e-15 86.3 67 70.1
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 2.4e-15 86.3 47 87.2
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 2.4e-15 86.3 59 78.0
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 5.5e-15 85.1 61 70.5
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 5.5e-15 85.1 63 76.2
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 5.5e-15 85.1 65 69.2
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.1e-15 84.7 67 68.7
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.1e-15 84.7 67 70.1
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 7.1e-15 84.7 59 71.2
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 7.1e-15 84.7 73 67.1
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 2.1e-14 83.2 168 54.2
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.7e-14 82.8 62 66.1
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 7.9e-14 81.3 63 73.0
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 7.9e-14 81.3 62 67.7
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 1.8e-13 80.1 65 69.2
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.8e-13 80.1 56 73.2
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 2.3e-13 79.7 62 62.9
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.3e-13 79.7 62 64.5
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 3.0e-13 79.3 55 70.9
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 6.7e-13 78.2 63 66.7
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 8.7e-13 77.8 56 71.4
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 8.7e-13 77.8 67 67.2
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 8.7e-13 77.8 67 67.2
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.1e-12 77.4 64 67.2
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 1.5e-12 77.0 62 61.3
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 3.3e-12 75.9 66 65.2
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 3.3e-12 75.9 73 58.9
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 7.4e-12 74.7 65 61.5
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 1.3e-11 73.9 62 58.1
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 2.1e-11 73.2 62 59.7
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 2.8e-11 72.8 63 60.3
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 2.8e-11 72.8 51 68.6
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 3.7e-11 72.4 66 59.1
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 2.4e-10 69.7 50 68.0
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 3.1e-10 69.3 50 68.0
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 3.1e-10 69.3 50 68.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 3.1e-10 69.3 50 68.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 3.1e-10 69.3 50 68.0
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 9.0e-10 67.8 60 58.3
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 9.0e-10 67.8 62 59.7
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 1.2e-09 67.4 57 63.2
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 2.6e-09 66.2 56 58.9
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 3.4e-09 65.9 67 56.7
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 5.8e-09 65.1 59 61.0
SHI10279 Sapria himalayana HOM05D007783 ORTHO05D009740 5.8e-09 65.1 62 54.8
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 5.8e-09 65.1 47 68.1
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 5.8e-09 65.1 64 59.4
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 7.6e-09 64.7 70 47.1
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 1.0e-08 64.3 65 60.0
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 1.3e-08 63.9 58 62.1
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.7e-08 63.5 63 55.6
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.9e-08 62.8 63 57.1
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 4.9e-08 62.0 50 62.0
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 1.4e-07 60.5 55 58.2
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 3.2e-07 59.3 47 63.8
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 7.1e-07 58.2 66 50.0
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 2.1e-06 56.6 62 53.2
PSO210G2314 Papaver somniferum HOM05D007783 ORTHO05D009740 2.7e-06 56.2 61 49.2
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 6.0e-06 55.1 63 54.0


User provided reference genes

Program Settings