Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 0.0e+00 1088.9 545 100.0
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 3.2e-282 974.5 547 90.1
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 9.2e-277 956.4 549 86.7
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.7e-276 954.9 549 86.5
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.6e-273 944.5 549 85.4
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.8e-248 860.5 546 80.0
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 2.4e-245 852.0 548 79.6
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 5.6e-242 840.9 546 75.8
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.2e-237 825.1 546 75.1
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.4e-232 808.9 564 72.2
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 2.2e-230 802.4 554 73.5
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 4.9e-230 801.2 532 74.8
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 8.4e-230 800.4 545 74.1
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.4e-224 782.3 546 74.4
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 5.3e-224 781.2 552 72.6
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 9.0e-224 780.4 558 71.5
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 6.4e-222 774.2 548 75.5
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.9e-221 772.7 550 70.7
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 2.1e-220 769.2 546 72.7
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 2.3e-219 765.8 542 71.8
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 3.9e-219 765.0 551 71.0
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 3.7e-217 758.4 585 67.4
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 9.0e-216 753.8 535 72.0
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 3.4e-215 751.9 548 69.5
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 7.6e-215 750.7 540 70.6
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 2.5e-213 745.7 534 71.3
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.2e-213 745.3 557 67.5
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 6.0e-212 741.1 534 69.7
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.7e-210 734.6 534 68.7
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.3e-209 733.4 534 70.8
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 2.2e-209 732.6 535 68.8
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 2.8e-209 732.3 547 68.7
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 1.1e-208 730.3 546 67.0
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-208 730.3 535 68.6
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-208 729.6 535 68.6
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.0e-208 727.2 535 68.2
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 9.0e-208 727.2 546 66.8
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.2e-207 726.9 535 68.6
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.6e-207 725.7 551 67.7
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 3.4e-207 725.3 546 66.5
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 6.5e-206 721.1 557 66.2
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.6e-204 716.5 550 67.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 2.1e-204 716.1 556 68.2
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.9e-202 709.5 552 66.7
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 2.5e-202 709.1 546 65.6
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 3.3e-202 708.8 493 72.0
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 7.4e-202 707.6 541 66.4
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 6.3e-201 704.5 546 65.9
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.1e-200 703.7 548 65.7
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.4e-200 703.4 547 65.3
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 3.1e-200 702.2 548 65.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 9.1e-200 700.7 551 65.3
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.6e-199 699.1 546 64.7
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.0e-198 697.2 511 71.8
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.1e-197 693.7 549 63.9
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.4e-197 693.3 546 65.4
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.4e-197 693.3 556 64.7
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 6.1e-196 688.0 546 66.1
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 3.0e-195 685.6 542 66.2
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 5.1e-195 684.9 546 65.2
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.7e-193 679.9 544 64.0
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 4.8e-193 678.3 547 64.0
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 6.3e-193 677.9 561 62.7
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 6.3e-193 677.9 543 65.4
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 5.3e-192 674.9 550 62.5
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 6.9e-192 674.5 571 62.9
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 1.2e-191 673.7 564 62.1
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 3.4e-191 672.2 550 64.4
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.3e-190 670.2 546 64.1
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.1e-189 667.2 504 66.3
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.4e-189 666.8 554 63.9
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.4e-189 666.8 550 64.0
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 3.2e-189 665.6 547 63.4
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 6.1e-188 661.4 577 59.8
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.3e-185 653.7 560 62.7
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.3e-185 653.7 692 54.5
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.1e-184 650.6 547 62.3
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 3.1e-184 649.0 546 63.6
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 7.0e-184 647.9 549 62.3
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-183 646.4 548 61.7
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 3.5e-183 645.6 548 61.1
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 6.5e-182 641.3 546 63.6
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 3.6e-180 635.6 551 61.2
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.4e-179 633.6 548 61.9
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-178 629.8 548 61.7
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 7.5e-178 627.9 592 57.6
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 9.7e-178 627.5 537 60.7
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 9.7e-178 627.5 560 63.4
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 8.2e-177 624.4 548 61.3
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.8e-176 623.2 546 61.0
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 3.1e-176 622.5 548 59.1
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 5.3e-176 621.7 548 61.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.3e-174 617.1 548 58.2
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 6.5e-174 614.8 557 60.1
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 8.8e-171 604.4 513 61.6
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.6e-170 602.8 546 58.4
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 2.2e-169 599.7 501 62.1
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.5e-165 587.0 414 69.8
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.7e-161 573.5 447 64.0
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 8.3e-161 571.2 540 58.0
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.9e-157 560.1 491 59.7
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 6.8e-155 551.6 548 53.5
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.9e-153 545.4 703 49.4
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.8e-147 526.9 481 59.0
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 5.2e-147 525.4 531 55.4
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 4.9e-145 518.8 339 76.1
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.1e-136 491.1 427 59.7
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.8e-123 447.2 324 69.4
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 7.6e-122 441.8 395 58.5
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 4.2e-120 436.0 342 67.5
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 8.7e-118 428.3 325 68.3
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 7.4e-109 398.7 333 65.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.6e-100 370.9 546 39.6
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 7.6e-98 362.1 375 53.3
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 4.9e-97 359.4 536 40.1
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 8.4e-97 358.6 532 39.1
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 5.5e-96 355.9 342 57.0
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 3.7e-92 343.2 365 54.5
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 4.5e-90 336.3 383 48.8
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.0e-89 335.1 522 37.5
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 7.9e-87 325.5 538 35.3
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.1e-83 315.1 342 50.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.5e-64 250.8 148 83.8
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 3.2e-64 250.4 134 89.6
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 6.1e-63 246.1 132 87.9
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.5e-61 241.5 200 58.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.2e-58 231.9 168 72.0
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 8.0e-55 219.2 151 70.9
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.4e-54 218.4 178 57.9
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 6.3e-52 209.5 140 71.4
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.8e-47 194.1 104 82.7
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 4.7e-47 193.4 213 52.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.8e-46 191.4 588 27.4
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.0e-34 151.4 156 57.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.3e-30 137.9 108 64.8
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.0e-29 134.8 128 55.5
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.4e-28 129.8 99 64.6
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 6.6e-25 119.8 160 43.1
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 3.3e-24 117.5 128 46.1
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.4e-22 112.1 103 58.3
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-22 111.3 81 69.1
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.2e-20 104.8 53 86.8
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.9e-20 103.6 98 56.1
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 8.6e-17 92.8 98 51.0
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 1.5e-13 82.0 76 53.9
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 2.0e-13 81.6 160 39.4
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 3.4e-13 80.9 69 59.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-11 75.9 86 52.3
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.2e-10 72.4 133 34.6
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.1e-06 57.8 76 36.8


User provided reference genes

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