Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 7.4e-127 457.2 231 100.0
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 5.1e-112 407.9 224 92.0
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 7.4e-111 404.1 224 91.5
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 4.8e-110 401.4 224 90.2
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.8e-109 399.4 224 90.2
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 2.6e-108 395.6 230 87.8
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 5.5e-106 387.9 218 87.6
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 1.8e-101 372.9 224 82.6
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.2e-100 370.2 224 82.1
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 2.0e-100 369.4 224 83.0
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 3.5e-100 368.6 224 83.0
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 5.9e-100 367.9 226 81.0
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 7.7e-100 367.5 224 80.4
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 1.0e-99 367.1 243 77.8
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.0e-99 367.1 224 81.2
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 1.7e-99 366.3 218 85.3
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 1.7e-99 366.3 224 82.6
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 2.2e-99 365.9 207 87.9
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 5.0e-99 364.8 224 80.8
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 8.5e-99 364.0 215 82.8
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 1.5e-98 363.2 224 80.8
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.5e-98 363.2 229 81.2
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 1.5e-98 363.2 214 82.2
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.9e-98 362.8 217 82.5
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 3.2e-98 362.1 221 82.4
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 4.2e-98 361.7 224 79.0
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 4.2e-98 361.7 229 81.7
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 4.2e-98 361.7 218 82.1
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 7.2e-98 360.9 214 82.7
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.2e-97 360.1 228 78.1
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 1.2e-97 360.1 221 81.0
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 1.6e-97 359.8 215 82.3
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 1.6e-97 359.8 218 82.1
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.6e-97 359.8 221 81.4
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 2.1e-97 359.4 215 81.4
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 6.1e-97 357.8 214 83.2
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 1.0e-96 357.1 222 78.4
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.4e-96 356.7 224 80.4
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 1.8e-96 356.3 224 79.9
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 1.8e-96 356.3 224 79.9
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 4.0e-96 355.1 226 79.6
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 4.0e-96 355.1 212 83.0
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 5.2e-96 354.8 224 79.5
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 6.7e-96 354.4 224 79.0
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 8.8e-96 354.0 224 79.5
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 1.5e-95 353.2 223 79.8
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 7.5e-95 350.9 214 79.0
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 9.7e-95 350.5 220 78.2
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 9.7e-95 350.5 224 78.6
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 2.2e-94 349.4 225 78.2
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 4.8e-94 348.2 218 79.8
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 4.8e-94 348.2 218 79.4
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 6.3e-94 347.8 222 77.0
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 1.1e-93 347.1 224 77.7
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 2.4e-93 345.9 223 78.9
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 3.1e-93 345.5 224 77.7
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.1e-93 345.5 245 73.5
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 4.1e-93 345.1 220 78.2
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 5.3e-93 344.7 222 77.5
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 7.0e-93 344.4 218 78.9
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 9.1e-93 344.0 220 78.6
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 9.1e-93 344.0 217 79.3
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 9.1e-93 344.0 224 76.8
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 5.0e-91 338.2 225 76.4
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 7.2e-90 334.3 228 76.3
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 1.2e-89 333.6 220 77.3
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 2.1e-89 332.8 224 73.7
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 2.7e-89 332.4 262 70.2
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 3.6e-89 332.0 220 78.2
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 4.7e-89 331.6 218 74.8
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 8.8e-88 327.4 222 76.1
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 2.0e-87 326.2 217 74.7
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.3e-86 323.6 217 74.2
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 4.1e-85 318.5 200 80.5
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 9.1e-85 317.4 221 71.9
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 4.5e-84 315.1 211 76.3
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 1.3e-83 313.5 224 70.5
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 2.3e-83 312.8 220 74.1
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 3.8e-83 312.0 207 78.3
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 5.0e-83 311.6 193 78.8
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.1e-82 310.5 224 73.2
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 1.1e-82 310.5 246 67.5
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 3.3e-82 308.9 230 70.9
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 4.2e-82 308.5 201 77.1
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 7.2e-82 307.8 247 67.2
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 4.7e-81 305.1 224 67.9
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 3.4e-79 298.9 217 68.7
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 3.5e-76 288.9 218 67.9
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 8.6e-75 284.3 260 60.4
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.3e-74 282.3 178 77.5
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 9.5e-74 280.8 223 67.3
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 1.6e-73 280.0 221 66.1
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 2.8e-73 279.3 225 65.3
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 5.2e-72 275.0 207 68.6
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 3.1e-64 249.2 154 79.9
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 3.1e-64 249.2 153 80.4
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 5.8e-63 245.0 269 54.3
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.3e-62 243.8 217 59.0
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 4.1e-61 238.8 208 63.0
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 5.4e-61 238.4 208 64.9
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 3.9e-59 232.3 160 71.9
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 2.1e-57 226.5 227 53.7
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 2.4e-53 213.0 227 53.3
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 6.2e-49 198.4 221 52.0
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 8.1e-49 198.0 143 68.5
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.8e-48 196.8 201 57.7
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 2.4e-48 196.4 161 66.5
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 1.1e-42 177.6 225 46.7
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 3.1e-40 169.5 150 56.7
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 1.6e-36 157.1 85 88.2
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 3.9e-35 152.5 384 32.6
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.9e-34 150.2 105 71.4
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 9.3e-29 131.3 70 88.6
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 2.7e-28 129.8 84 70.2
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.8e-25 119.0 143 49.0
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.7e-22 110.5 98 59.2
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 8.4e-22 108.2 66 81.8
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 8.7e-19 98.2 51 90.2
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 7.4e-18 95.1 71 70.4
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.8e-17 93.2 67 70.1
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 3.7e-17 92.8 67 74.6
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.4e-13 80.9 119 46.2
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.1e-12 77.0 192 30.7
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 6.0e-12 75.5 51 74.5
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 3.9e-11 72.8 99 43.4
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.1e-10 71.2 57 61.4
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.8e-09 65.9 45 68.9


User provided reference genes

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