Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 7.3e-78 293.9 156 100.0
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.5e-70 268.9 158 90.5
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.6e-70 266.9 158 89.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.2e-69 266.5 158 89.2
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 6.2e-69 264.2 158 88.0
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.1e-69 263.8 156 89.1
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.1e-69 263.8 156 89.1
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 7.1e-65 250.8 155 84.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.2e-64 250.0 159 81.8
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 4.6e-64 248.1 154 83.8
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.6e-64 248.1 156 81.4
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.7e-63 246.1 158 81.0
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.0e-63 245.4 154 79.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.9e-62 242.7 149 81.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.9e-62 242.7 155 81.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.5e-62 242.3 159 79.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 3.3e-62 241.9 156 80.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.6e-62 241.1 147 81.6
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 7.3e-62 240.7 147 81.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.3e-62 240.7 139 87.8
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.8e-61 238.8 151 79.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.6e-61 238.4 156 80.1
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 8.1e-61 237.3 187 70.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 8.1e-61 237.3 157 77.1
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.4e-60 236.5 153 80.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 3.1e-60 235.3 156 76.9
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.0e-60 235.0 153 79.1
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.0e-60 235.0 139 86.3
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 5.3e-60 234.6 150 78.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 6.9e-60 234.2 142 82.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.9e-60 234.2 158 77.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.0e-60 233.8 153 79.1
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 9.0e-60 233.8 142 82.4
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.2e-59 233.4 158 78.5
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-59 233.4 158 76.6
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.4e-59 231.9 151 78.8
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-59 231.9 139 85.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.4e-59 231.9 158 79.7
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 4.5e-59 231.5 160 74.4
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 5.8e-59 231.1 142 81.7
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 5.8e-59 231.1 142 81.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 7.6e-59 230.7 142 80.3
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 9.9e-59 230.3 141 81.6
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 9.9e-59 230.3 142 78.2
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.7e-58 229.6 138 84.1
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.2e-58 229.2 139 82.0
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.9e-58 228.8 139 81.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.9e-58 228.8 142 81.0
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.9e-58 228.8 158 79.1
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 6.4e-58 227.6 139 80.6
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 6.4e-58 227.6 145 79.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 6.4e-58 227.6 139 82.0
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.1e-57 226.9 154 75.3
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.1e-57 226.9 138 82.6
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.1e-57 226.9 138 81.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.4e-57 226.5 142 81.0
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-57 226.5 141 78.7
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.4e-57 225.7 139 79.9
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.4e-57 225.7 149 75.8
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.2e-57 225.3 155 75.5
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.2e-57 225.3 155 75.5
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 3.2e-57 225.3 155 75.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 5.4e-57 224.6 138 80.4
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-56 222.6 140 76.4
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-56 222.6 142 74.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.7e-56 222.2 141 80.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 2.7e-56 222.2 141 79.4
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.7e-56 222.2 156 77.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.5e-56 221.9 138 79.0
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-56 221.9 142 73.2
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 4.6e-56 221.5 129 89.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 4.6e-56 221.5 141 75.2
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.6e-56 221.5 141 78.7
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.9e-56 220.7 142 75.4
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-55 220.3 142 73.2
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-55 220.3 142 73.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-55 219.2 138 78.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 3.0e-55 218.8 138 77.5
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 3.0e-55 218.8 138 77.5
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 3.0e-55 218.8 151 73.5
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 3.0e-55 218.8 151 73.5
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 3.0e-55 218.8 138 77.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.0e-55 218.8 137 79.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-55 218.4 142 73.2
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 3.9e-55 218.4 156 76.3
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 5.1e-55 218.0 207 60.4
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 8.7e-55 217.2 137 77.4
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 8.7e-55 217.2 156 75.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.1e-54 216.9 140 76.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.1e-54 216.9 156 75.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-54 216.5 138 76.8
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.5e-54 216.5 138 76.8
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.3e-54 215.3 131 84.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.3e-54 215.3 139 79.1
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.3e-54 214.9 139 75.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 9.6e-54 213.8 141 75.2
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 75.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.1e-53 212.6 156 71.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 4.8e-53 211.5 179 63.7
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.8e-53 211.5 141 75.9
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.8e-52 209.5 131 81.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.4e-52 209.1 147 70.7
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 5.3e-52 208.0 245 53.1
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 6.9e-52 207.6 161 67.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 9.0e-52 207.2 218 54.6
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.5e-51 206.5 166 66.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.5e-51 204.9 142 70.4
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.3e-50 203.4 129 79.1
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.3e-50 203.4 181 60.2
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.7e-50 203.0 130 78.5
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-50 202.6 142 69.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.9e-50 202.2 228 52.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.9e-50 201.4 129 78.3
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-49 200.3 142 69.0
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.4e-49 199.1 114 85.1
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.4e-49 199.1 130 79.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.4e-49 199.1 147 70.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.3e-47 192.6 136 75.7
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-47 192.6 116 81.0
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-47 192.6 116 81.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-47 191.8 116 81.0
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-47 191.4 116 81.0
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 3.3e-46 188.7 116 79.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-46 188.0 116 79.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-45 186.8 116 78.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.6e-45 186.4 142 69.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.8e-45 185.7 115 78.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.8e-45 184.9 122 77.0
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.0e-44 181.8 111 80.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.0e-44 181.8 111 80.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-43 180.3 115 75.7
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.6e-43 179.1 151 59.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.1e-41 173.7 144 55.6
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 5.5e-41 171.4 148 56.8
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.1e-40 169.5 143 55.2
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.1e-40 169.5 138 62.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.0e-39 165.6 151 59.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 8.2e-37 157.5 96 83.3
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 9.0e-36 154.1 87 88.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.9e-35 151.4 103 73.8
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 6.1e-32 141.4 200 45.5
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.9e-32 141.0 136 59.6
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 6.7e-31 137.9 88 80.7
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.1e-28 129.0 84 71.4
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.0e-26 124.0 148 41.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 5.0e-26 121.7 70 82.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-25 119.8 72 83.3
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-25 119.8 72 83.3
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 4.2e-25 118.6 72 81.9
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 7.2e-25 117.9 136 41.9
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 5.1e-23 111.7 73 69.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.8e-23 110.9 64 84.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-21 106.7 66 81.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.3e-20 101.7 59 84.7
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.0e-20 101.3 59 84.7
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.5e-17 92.8 59 74.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.0e-15 85.9 64 70.3
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 5.2e-15 85.1 127 34.6
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 6.7e-15 84.7 70 65.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.0e-14 83.2 64 68.8
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 2.6e-14 82.8 49 77.6
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.7e-13 80.1 133 30.1
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.0e-11 73.2 52 63.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-10 70.1 50 68.0
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-10 70.1 50 68.0
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.5e-09 65.1 59 62.7


User provided reference genes

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