Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 6.8e-131 471.5 413 100.0
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.4e-112 409.8 406 92.1
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.2e-112 409.5 413 91.5
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.6e-103 380.6 404 83.9
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 2.1e-100 370.2 405 77.8
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 2.3e-99 366.7 412 76.7
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.5e-98 364.0 405 82.0
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 4.1e-96 355.9 408 75.0
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 9.2e-96 354.8 404 79.7
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 7.8e-95 351.7 405 84.2
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.9e-93 347.1 405 80.7
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.5e-93 346.7 403 77.2
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 9.6e-93 344.7 404 75.5
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 1.2e-92 344.4 398 75.6
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 8.1e-92 341.7 405 79.3
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.1e-91 341.3 405 79.8
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 1.4e-91 340.9 404 78.0
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 1.4e-91 340.9 404 78.0
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 2.4e-91 340.1 406 79.8
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 5.2e-91 339.0 404 75.2
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 5.2e-91 339.0 404 75.2
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 3.4e-90 336.3 408 78.2
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 9.9e-90 334.7 405 73.3
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 1.3e-89 334.3 405 78.0
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 3.8e-89 332.8 404 77.7
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 4.9e-89 332.4 413 77.7
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 6.4e-89 332.0 409 75.1
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.1e-88 331.3 467 59.5
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.1e-88 331.3 405 72.1
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 1.4e-88 330.9 403 78.2
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 3.2e-88 329.7 404 75.7
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 3.2e-88 329.7 402 72.1
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 3.2e-88 329.7 405 74.3
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 5.4e-88 328.9 405 74.8
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.2e-87 327.8 405 77.5
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.6e-87 327.4 414 74.9
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 1.6e-87 327.4 404 77.2
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 2.1e-87 327.0 403 72.7
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.1e-87 327.0 405 78.0
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 3.5e-87 326.2 411 72.3
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 4.6e-87 325.9 401 75.8
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 6.0e-87 325.5 405 74.8
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 6.0e-87 325.5 405 80.5
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 1.3e-86 324.3 403 69.5
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.3e-86 324.3 404 73.0
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.7e-86 323.9 404 81.9
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.7e-86 323.9 404 73.0
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.7e-86 323.9 413 77.2
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 5.1e-86 322.4 402 77.4
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 8.7e-86 321.6 403 76.7
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 1.5e-85 320.9 403 76.9
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 2.5e-85 320.1 405 77.3
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 2.5e-85 320.1 406 75.6
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 1.3e-84 317.8 405 71.9
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 2.1e-84 317.0 405 72.8
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 2.1e-84 317.0 406 76.8
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 2.8e-84 316.6 405 71.9
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 1.1e-83 314.7 397 75.3
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 1.8e-83 313.9 412 80.6
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 3.1e-83 313.2 405 76.5
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 4.0e-83 312.8 412 70.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 4.5e-82 309.3 405 72.3
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 4.5e-82 309.3 410 74.6
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 5.8e-82 308.9 404 69.6
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 9.9e-82 308.1 405 75.6
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 2.9e-81 306.6 397 72.3
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 2.9e-81 306.6 405 75.6
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 2.9e-81 306.6 407 71.5
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 2.9e-81 306.6 405 74.1
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 6.4e-81 305.4 405 71.6
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 3.2e-80 303.1 404 69.8
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 2.7e-79 300.1 406 70.9
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 7.9e-79 298.5 404 74.0
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 1.0e-78 298.1 401 76.3
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 3.3e-77 293.1 411 69.6
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 9.6e-77 291.6 400 71.2
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 4.0e-75 286.2 406 69.0
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 6.9e-75 285.4 401 69.6
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 2.6e-74 283.5 432 57.4
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 2.2e-73 280.4 403 75.7
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 8.4e-73 278.5 398 78.6
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 5.5e-72 275.8 407 77.9
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 2.3e-70 270.4 405 68.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 2.3e-70 270.4 409 72.1
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 2.5e-69 266.9 402 77.4
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 2.8e-68 263.5 540 50.2
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.4e-67 261.2 402 69.2
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 5.8e-66 255.8 405 76.3
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.4e-64 251.1 185 90.3
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 9.3e-64 248.4 406 70.7
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 1.6e-63 247.7 404 60.1
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 4.6e-63 246.1 397 69.3
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 1.3e-62 244.6 405 66.4
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 3.7e-60 236.5 401 73.3
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 2.4e-59 233.8 423 56.0
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 4.5e-58 229.6 420 60.2
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 1.0e-54 218.4 393 73.8
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 5.7e-53 212.6 403 72.0
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 1.1e-51 208.4 401 72.8
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 1.3e-41 174.9 185 61.6
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 5.0e-41 172.9 183 59.0
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.4e-40 171.4 109 75.2
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 1.4e-40 171.4 109 75.2
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 2.5e-40 170.6 402 61.9
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.8e-38 164.5 398 65.8
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.5e-37 161.4 180 52.8
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 2.2e-36 157.5 112 71.4
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 2.8e-36 157.1 154 70.8
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.4e-35 154.8 393 43.3
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 6.5e-33 146.0 97 75.3
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 8.5e-33 145.6 107 64.5
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 1.3e-28 131.7 109 56.0
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 2.6e-21 107.5 68 69.1
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 2.5e-08 64.3 63 87.3
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-07 62.0 63 85.7
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 1.6e-07 61.6 63 73.0
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 1.6e-07 61.6 63 77.8
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 3.6e-07 60.5 63 84.1
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 8.9e-06 55.8 60 45.0


User provided reference genes

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