Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2543.8 1270 100.0
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2399.0 1270 93.7
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2393.2 1270 93.5
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2391.7 1270 93.4
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2369.7 1267 93.1
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2367.4 1267 92.9
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2365.1 1267 92.7
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2276.5 1267 88.2
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2273.0 1268 87.4
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2268.8 1262 88.7
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2265.0 1262 88.4
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2256.1 1267 88.0
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2255.3 1267 87.7
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2254.2 1267 87.8
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2251.9 1269 86.9
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2249.6 1267 87.0
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2244.9 1268 86.9
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2238.8 1267 86.5
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2238.0 1267 86.8
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2237.2 1267 86.9
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2235.3 1267 86.9
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2228.0 1271 86.2
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2226.4 1267 86.0
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2220.3 1270 85.3
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2217.2 1271 86.5
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2212.6 1267 86.1
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2211.8 1263 85.7
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2211.0 1267 85.4
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2208.3 1266 85.2
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2206.0 1270 84.6
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2204.9 1271 86.0
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2199.9 1270 84.1
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2199.5 1271 85.8
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1270 84.1
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2196.8 1270 84.6
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2196.4 1268 84.3
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2194.9 1270 84.4
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2194.5 1270 84.3
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2193.3 1271 83.9
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2193.3 1271 85.4
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2192.5 1270 84.2
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2191.4 1267 84.0
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2190.6 1263 86.0
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2190.2 1271 83.8
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2189.1 1268 84.8
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2188.3 1267 83.8
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2184.8 1270 84.1
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2181.8 1276 84.1
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2181.4 1268 84.5
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2181.4 1267 84.8
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2181.0 1266 84.1
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2180.2 1270 84.3
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2179.8 1270 83.3
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2179.1 1268 84.3
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2177.5 1267 83.5
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2176.0 1267 83.9
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2175.2 1268 84.5
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2174.8 1267 84.4
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1270 84.3
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1271 83.6
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1267 83.3
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1266 83.6
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2166.0 1270 83.9
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2166.0 1270 83.1
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2166.0 1268 84.2
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2164.8 1270 84.6
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2164.8 1268 83.4
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1272 83.3
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2163.7 1273 83.6
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2162.1 1268 83.0
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2161.7 1239 85.7
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2159.0 1267 84.1
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2153.3 1208 87.9
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2150.9 1271 83.1
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1272 82.9
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2148.2 1266 82.5
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2145.5 1249 83.7
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2142.5 1249 84.1
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2138.2 1268 82.6
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2135.9 1263 82.8
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2135.9 1270 82.3
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2135.9 1271 82.4
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2129.8 1268 82.3
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2101.6 1267 81.0
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2099.7 1274 82.2
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2096.2 1271 81.5
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2091.2 1271 80.7
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2073.1 1267 81.1
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2068.5 1270 79.5
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2064.3 1267 79.2
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2058.9 1267 80.2
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2058.1 1264 80.3
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2021.5 1266 79.4
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1994.2 1161 84.8
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1973.4 1270 76.9
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1949.9 1276 74.5
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1897.1 1271 74.4
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1876.3 1280 72.1
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1872.1 1072 84.3
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1843.6 1274 72.0
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1842.8 1191 77.0
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1842.0 1089 83.0
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1837.8 1249 73.4
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1795.8 1268 72.2
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1789.2 1268 72.3
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1789.2 1130 79.5
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1656.7 966 83.0
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1550.4 1047 73.1
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1541.2 1322 61.3
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1397.9 814 84.4
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1386.3 1267 60.8
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1313.1 1329 53.6
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1309.7 1390 52.6
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1280.4 725 86.1
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1179.1 1042 61.6
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1142.1 811 73.0
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 1.7e-270 936.8 570 81.8
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 4.8e-260 902.1 502 87.8
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 6.5e-257 891.7 1249 41.2
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 1.1e-221 774.6 529 74.1
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-219 765.0 585 64.4
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 6.8e-206 722.2 451 81.2
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 8.6e-185 652.1 389 83.5
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 4.2e-131 473.8 359 66.9
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 1.7e-124 451.8 313 75.7
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 2.1e-106 391.7 270 73.0
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 4.9e-79 300.8 480 41.9
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.9e-67 262.3 170 73.5
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.7e-66 257.7 170 72.9
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.0e-65 254.6 170 71.8
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.4e-64 251.1 138 90.6
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 2.3e-60 238.8 234 56.4
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 1.2e-48 199.9 116 80.2
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.4e-41 176.4 152 64.5
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.3e-39 169.9 91 87.9
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 1.4e-38 166.4 182 54.4
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 4.9e-31 141.4 99 65.7
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 9.6e-27 127.1 104 62.5


User provided reference genes

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