Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 6.1e-252 873.6 428 100.0
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.2e-234 816.2 428 91.4
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 2.9e-233 811.6 427 92.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.6e-222 773.5 428 85.5
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 7.3e-221 770.4 428 85.3
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.2e-220 769.6 428 85.3
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 9.9e-210 733.4 428 81.1
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 2.2e-209 732.3 431 81.2
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.9e-208 729.2 417 82.3
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 3.5e-207 724.9 430 80.0
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 3.6e-204 714.9 429 79.5
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 6.2e-204 714.1 427 80.1
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.5e-202 709.5 409 81.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 4.5e-202 708.0 421 79.8
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.5e-199 698.4 428 76.6
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 4.6e-199 698.0 420 77.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 8.7e-198 693.7 428 77.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 2.5e-197 692.2 420 77.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.6e-196 689.5 414 76.8
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 6.2e-196 687.6 432 75.2
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 4.0e-195 684.9 430 77.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.0e-195 683.7 428 75.7
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 1.5e-194 682.9 417 79.1
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 5.8e-194 681.0 431 75.9
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.8e-193 678.3 425 75.3
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 6.4e-193 677.6 434 74.0
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.1e-192 676.8 416 75.7
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 2.1e-191 672.5 430 74.9
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 3.5e-191 671.8 428 75.5
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 3.9e-190 668.3 429 75.1
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.9e-189 666.0 429 73.4
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.5e-189 665.6 427 73.8
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 4.3e-189 664.8 417 75.1
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.3e-189 664.8 414 76.1
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 4.3e-189 664.8 416 75.7
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 5.6e-189 664.5 430 74.0
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 5.6e-189 664.5 433 75.1
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.6e-188 662.9 413 75.1
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.1e-188 662.5 416 75.7
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 2.1e-188 662.5 430 73.7
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 4.8e-188 661.4 428 74.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 6.2e-188 661.0 430 73.0
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.1e-187 660.2 432 73.6
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.1e-187 660.2 432 72.9
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.1e-187 660.2 428 73.6
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.8e-187 659.4 413 74.8
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 1.8e-187 659.4 412 74.0
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.4e-187 659.1 416 74.8
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 9.0e-187 657.1 432 72.7
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 9.0e-187 657.1 432 72.7
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.2e-186 656.8 418 77.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.5e-186 656.4 450 72.0
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.6e-186 655.6 415 74.5
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 2.2e-185 652.5 432 72.7
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.9e-185 652.1 432 72.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 8.4e-185 650.6 418 74.2
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 8.4e-185 650.6 461 70.1
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-184 649.8 414 74.2
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.9e-184 649.4 433 72.7
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 2.5e-184 649.0 416 76.0
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-184 648.3 433 72.5
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 4.2e-184 648.3 423 75.2
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 7.1e-184 647.5 418 74.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.3e-184 647.1 434 70.5
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.6e-183 646.4 433 72.5
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 3.5e-183 645.2 416 74.8
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 3.5e-183 645.2 416 74.8
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 7.9e-183 644.0 418 73.4
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 2.3e-182 642.5 412 74.0
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 3.9e-182 641.7 424 71.7
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 5.1e-182 641.3 404 74.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 5.7e-181 637.9 420 73.6
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.6e-180 636.3 428 70.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.2e-180 636.0 419 70.9
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.4e-179 633.3 419 70.4
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 2.4e-179 632.5 427 70.0
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 1.5e-178 629.8 413 72.2
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-178 629.0 418 71.3
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 3.4e-178 628.6 434 69.1
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 3.4e-178 628.6 430 70.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.9e-178 627.9 418 71.1
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 5.9e-178 627.9 438 69.2
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.3e-177 626.7 421 70.3
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.3e-177 626.7 421 70.3
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 2.9e-177 625.5 436 69.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.8e-177 625.2 413 70.9
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.4e-176 623.2 429 70.2
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.6e-175 619.8 420 69.8
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 7.9e-175 617.5 410 72.0
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.7e-172 609.8 410 71.0
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 9.1e-171 604.0 428 69.9
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-170 603.6 430 68.4
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 2.0e-170 602.8 410 69.5
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 7.7e-170 600.9 413 69.5
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.7e-169 599.7 421 67.9
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 2.5e-168 595.9 413 70.5
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.2e-168 595.1 419 69.5
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 6.1e-167 591.3 415 67.5
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.0e-165 586.3 416 69.2
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 3.3e-165 585.5 433 64.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 9.7e-165 583.9 397 70.0
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.3e-164 581.3 435 65.7
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 9.1e-163 577.4 413 67.6
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.2e-162 577.0 436 65.8
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.5e-162 575.1 420 64.8
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 3.9e-158 562.0 354 76.6
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.6e-154 550.1 430 59.8
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.0e-154 549.7 433 64.2
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-153 547.4 436 61.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.1e-151 539.7 423 61.0
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 2.3e-150 536.2 430 57.2
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.6e-149 532.7 429 60.8
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 1.3e-148 530.4 410 62.0
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 3.7e-148 528.9 420 61.2
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 3.7e-148 528.9 430 56.3
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-141 507.3 446 55.4
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.4e-139 498.4 393 59.5
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 8.6e-137 491.1 413 56.4
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.8e-131 473.4 409 59.9
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 3.9e-129 465.7 294 73.5
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 1.9e-128 463.4 308 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.0e-117 426.8 429 50.1
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-116 422.2 428 54.0
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.3e-113 413.3 428 52.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 4.3e-112 409.1 410 50.2
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 6.2e-111 405.2 413 47.9
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.1e-111 404.8 260 71.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.1e-110 402.9 420 46.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.3e-104 382.9 343 52.2
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 7.6e-93 345.1 426 43.0
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 9.9e-93 344.7 226 73.5
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 3.8e-92 342.8 264 68.2
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 9.3e-91 338.2 239 68.6
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-83 314.3 290 52.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 4.2e-59 233.0 157 70.1
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.1e-56 224.9 154 68.8
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.7e-52 211.1 308 39.0
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.8e-52 209.9 137 68.6
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 6.7e-49 199.1 146 67.1
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.6e-48 197.2 130 67.7
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 7.7e-45 185.7 112 75.0
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.1e-43 181.8 126 69.8
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.8e-39 166.4 159 57.2
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.8e-36 156.8 215 43.3
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-36 156.0 158 56.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.5e-35 152.9 405 28.9
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-24 117.9 79 73.4
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 9.8e-24 115.5 78 69.2
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-21 107.8 102 57.8
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.3e-20 105.1 68 70.6
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-19 101.7 92 58.7
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-19 100.9 71 67.6
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.3e-19 100.5 57 82.5
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.6e-18 97.1 73 58.9
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.0e-17 93.6 90 47.8
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.0e-17 93.6 82 54.9
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 9.8e-16 89.0 60 71.7
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-14 85.5 146 33.6
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-12 77.4 58 72.4
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 8.6e-12 75.9 68 58.8
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 5.6e-11 73.2 55 69.1
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.4e-09 68.6 106 36.8
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 1.5e-08 65.1 51 70.6
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-08 63.2 44 61.4
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.7e-07 61.6 72 34.7
SEGI_22616 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-06 57.0 65 36.9
C06p51380 Brassica napus HOM05D004203 ORTHO05D004830 7.0e-06 56.2 43 72.1
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 7.0e-06 56.2 42 66.7


User provided reference genes

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