Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.0e-191 671.8 364 100.0
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.4e-172 609.0 365 89.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.8e-158 560.5 364 83.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 5.4e-156 554.7 364 82.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.9e-155 551.2 364 81.9
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.3e-146 523.5 366 79.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 5.8e-142 508.1 363 76.3
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.7e-141 506.5 368 76.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.1e-140 503.8 369 75.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.4e-140 503.4 369 76.2
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 7.8e-139 497.7 366 75.4
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.8e-139 497.7 366 75.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.6e-138 494.6 366 75.1
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.5e-137 493.4 376 72.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.5e-137 492.7 370 73.8
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 7.3e-137 491.1 366 74.0
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.3e-137 491.1 372 73.4
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-136 490.3 368 73.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-136 489.6 367 74.1
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.1e-136 489.6 367 74.1
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 4.7e-136 488.4 366 74.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 6.2e-136 488.0 367 73.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 6.2e-136 488.0 373 72.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 8.0e-136 487.6 367 73.6
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 8.0e-136 487.6 369 71.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 8.0e-136 487.6 366 73.8
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-135 486.5 372 72.6
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 3.1e-135 485.7 370 73.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.1e-135 485.7 363 73.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 4.0e-135 485.3 367 73.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 4.0e-135 485.3 374 71.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.2e-135 485.0 372 72.6
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.2e-135 485.0 372 72.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 8.9e-135 484.2 366 73.8
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 8.9e-135 484.2 366 73.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 8.9e-135 484.2 363 72.7
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.6e-134 482.6 370 72.2
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.4e-134 482.3 367 73.3
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.4e-134 482.3 366 73.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.4e-134 481.9 374 71.4
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 5.8e-134 481.5 366 73.2
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 5.8e-134 481.5 366 73.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 7.5e-134 481.1 371 72.8
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.2e-133 479.6 363 71.9
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 2.9e-133 479.2 371 72.2
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.7e-133 478.8 380 70.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.9e-133 478.4 371 72.5
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 6.4e-133 478.0 365 73.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.1e-132 477.2 365 71.5
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.9e-132 476.5 371 73.0
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.9e-132 476.5 365 72.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 5.4e-132 474.9 374 71.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.6e-131 473.4 350 73.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-131 472.6 364 72.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.0e-131 471.5 335 76.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 6.0e-131 471.5 332 76.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.3e-130 470.3 359 72.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.3e-130 469.5 342 74.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.9e-130 468.8 364 72.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 5.1e-130 468.4 372 71.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 6.6e-130 468.0 368 70.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-129 467.2 342 74.0
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.5e-129 466.1 363 71.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.5e-129 464.2 381 68.2
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.8e-128 462.6 371 70.6
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.6e-128 462.2 365 72.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.6e-128 462.2 343 73.2
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.6e-128 462.2 325 75.4
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 6.2e-128 461.5 334 74.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 8.1e-128 461.1 324 75.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-127 460.7 347 71.2
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.4e-127 460.3 352 70.5
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.4e-127 460.3 375 69.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.1e-127 459.1 374 68.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.1e-127 459.1 370 68.6
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.2e-126 457.2 332 74.7
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.5e-126 456.8 370 68.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.6e-126 456.1 378 68.0
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.6e-126 456.1 369 68.0
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 2.6e-126 456.1 338 72.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.4e-126 455.3 364 70.1
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.8e-126 454.9 377 66.8
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 9.9e-126 454.1 325 75.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.7e-125 453.4 374 69.8
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.7e-125 453.4 362 68.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.9e-125 452.6 332 73.5
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.9e-125 451.8 377 66.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 6.4e-125 451.4 374 65.5
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 6.4e-125 451.4 366 68.9
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 3.2e-124 449.1 357 69.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 9.2e-124 447.6 330 73.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 9.2e-124 447.6 368 67.1
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.2e-123 447.2 346 70.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.1e-123 446.4 328 72.3
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.0e-123 444.9 346 69.7
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 7.8e-123 444.5 367 66.8
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 2.3e-122 443.0 368 68.2
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-122 442.6 347 71.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.0e-122 442.6 367 66.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 6.6e-122 441.4 321 74.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.5e-121 439.5 360 65.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.3e-121 439.1 360 65.8
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.3e-121 439.1 361 68.7
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.6e-121 438.3 353 69.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.6e-120 436.8 377 66.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.2e-120 434.9 369 65.9
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-119 434.1 335 65.4
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 4.0e-119 432.2 366 66.4
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.0e-118 429.9 338 70.1
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.6e-118 429.5 356 67.7
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.9e-116 423.3 357 67.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 9.2e-116 421.0 357 66.4
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.9e-114 415.6 329 69.3
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.5e-113 412.9 365 64.9
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.1e-111 407.5 374 61.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 9.9e-110 401.0 327 68.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.3e-106 390.6 371 62.8
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.9e-106 389.0 337 65.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-104 381.3 317 70.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-102 377.1 291 73.2
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.4e-100 370.5 320 64.1
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 6.7e-98 361.7 331 60.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 6.7e-98 361.7 358 57.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.5e-97 359.8 324 61.4
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 2.0e-94 350.1 247 76.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.5e-92 342.0 243 77.0
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 3.0e-90 336.3 206 79.6
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.0e-90 336.3 285 68.8
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 6.7e-90 335.1 324 59.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.2e-88 328.6 345 55.4
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-82 310.8 297 55.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.2e-77 293.5 322 55.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.2e-76 289.3 329 53.2
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.7e-70 268.5 330 52.7
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-66 256.9 240 57.1
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.6e-59 233.0 208 60.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.0e-55 218.8 230 53.5
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.7e-48 197.6 130 76.9
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.1e-44 184.9 164 56.7
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-44 184.5 142 67.6
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 4.1e-39 166.4 164 58.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.1e-31 139.8 90 74.4
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 6.6e-29 132.5 103 66.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-25 121.7 128 53.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-23 115.2 78 74.4
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.4e-23 114.8 115 57.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 2.7e-22 110.5 96 61.5
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.0e-21 108.6 122 53.3
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.5e-20 104.0 78 67.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.3e-20 103.6 282 32.6
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-19 99.8 66 75.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 4.0e-18 96.7 86 60.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-16 89.7 68 64.7
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.9e-16 89.7 116 45.7
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 2.7e-14 84.0 321 29.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 4.3e-12 76.6 59 61.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.6e-11 74.7 177 34.5
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.1e-11 74.3 139 39.6
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 8.1e-11 72.4 62 62.9
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.9e-10 68.9 67 56.7
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.8e-09 66.2 48 68.8
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.8e-09 66.2 48 68.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.6e-09 65.9 53 62.3
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.7e-08 63.5 48 62.5
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.4e-08 62.4 53 58.5
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-07 61.6 69 50.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.4e-07 61.6 43 69.8
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-07 60.8 48 64.6
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 4.1e-07 60.1 69 49.3
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-06 56.6 43 65.1
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.8e-06 55.8 48 58.3


User provided reference genes

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