Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 0.0e+00 1188.7 619 100.0
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 7.2e-294 1013.4 624 85.3
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.6e-280 968.4 617 82.0
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 2.9e-279 964.9 617 81.8
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 9.4e-278 959.9 617 81.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 5.4e-265 917.5 621 79.9
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.0e-252 876.7 628 73.4
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 8.6e-239 830.5 629 71.2
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.9e-238 829.3 631 69.1
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.5e-235 819.7 620 70.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.2e-232 810.1 617 69.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.5e-232 808.5 600 70.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.6e-229 799.7 629 66.8
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.3e-228 795.8 680 63.7
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.2e-227 793.5 631 67.8
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.6e-227 792.3 629 66.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.4e-227 791.6 623 67.4
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 9.9e-227 790.4 634 66.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-226 790.0 637 66.9
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.1e-225 786.9 610 68.9
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 7.1e-225 784.3 631 66.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.7e-223 779.6 616 67.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.3e-223 779.2 594 68.5
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.9e-223 778.5 646 65.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 8.6e-223 777.3 614 66.4
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.5e-222 775.8 629 66.3
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.2e-221 773.5 627 66.5
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.8e-221 772.3 636 65.7
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-219 766.1 612 67.8
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 2.9e-218 762.3 629 63.8
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 4.9e-218 761.5 664 63.1
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 4.6e-216 755.0 591 68.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 6.0e-216 754.6 616 64.0
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.5e-214 749.2 634 63.9
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.1e-212 743.8 630 64.3
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.0e-211 739.6 605 64.8
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.9e-210 735.7 618 62.6
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 8.4e-210 734.2 592 65.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 2.4e-209 732.6 589 65.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.2e-209 732.3 625 64.5
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.7e-208 729.2 590 65.1
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.3e-207 726.9 603 64.2
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.0e-207 725.7 671 60.4
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 8.7e-207 724.2 615 62.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.1e-206 723.8 609 63.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 3.3e-206 722.2 597 65.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 7.4e-206 721.1 591 65.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.8e-205 718.4 643 61.6
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.4e-204 716.8 591 64.3
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 9.0e-204 714.1 584 65.1
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.0e-203 713.0 606 63.5
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.6e-203 712.6 624 60.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 5.8e-203 711.4 605 63.6
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 4.9e-202 708.4 601 63.4
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.9e-201 706.4 598 62.7
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 9.3e-201 704.1 608 63.2
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.2e-200 703.7 628 61.8
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-199 700.7 588 63.9
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.0e-199 700.7 593 63.9
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.3e-199 699.5 618 61.8
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.3e-199 699.5 618 61.8
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-199 699.1 610 61.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.1e-198 697.2 637 60.8
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.1e-198 697.2 624 59.5
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.9e-198 696.4 586 62.5
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.1e-197 693.0 589 63.3
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.8e-197 692.6 604 62.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 6.2e-197 691.4 612 61.8
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 6.2e-197 691.4 627 60.1
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.4e-196 690.3 589 62.5
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 1.4e-196 690.3 583 63.5
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 6.9e-196 688.0 608 61.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 6.9e-196 688.0 605 61.5
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.0e-196 687.6 626 60.1
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.6e-195 686.0 626 60.4
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 7.6e-195 684.5 605 60.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 3.8e-194 682.2 606 61.6
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 3.8e-194 682.2 581 62.8
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.9e-193 679.9 629 60.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.7e-192 676.0 651 57.0
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 3.9e-191 672.2 615 61.1
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 6.7e-191 671.4 586 62.1
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-190 670.2 584 62.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.3e-190 669.1 635 59.8
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.3e-189 667.2 587 61.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.6e-189 666.8 614 58.8
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.1e-188 662.1 616 58.6
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 6.9e-188 661.4 619 59.3
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 3.6e-184 649.0 639 57.9
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-182 644.0 645 56.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.1e-182 644.0 580 61.4
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.7e-181 639.0 610 58.7
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.7e-178 630.2 641 57.1
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 3.8e-178 629.0 628 56.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 9.4e-177 624.4 636 56.9
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 9.4e-177 624.4 604 57.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.7e-174 615.1 630 57.3
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 7.4e-174 614.8 510 65.3
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 8.5e-170 601.3 511 62.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 8.5e-170 601.3 603 54.2
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-169 599.4 596 57.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.2e-168 597.4 592 57.3
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.0e-167 592.8 561 58.5
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.0e-166 590.1 604 53.6
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 4.8e-165 585.5 625 52.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 3.8e-162 575.9 595 56.1
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 8.8e-159 564.7 624 54.2
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 5.9e-155 552.0 471 64.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.8e-149 532.3 469 62.0
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.3e-130 470.3 585 46.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.9e-129 467.2 604 48.8
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.5e-121 441.0 621 43.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.3e-119 433.7 644 42.4
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-111 407.5 509 50.7
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.4e-103 381.3 426 54.5
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.2e-102 378.3 384 56.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.4e-95 354.8 257 70.4
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 4.5e-94 349.7 508 43.7
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 7.6e-78 295.8 351 50.7
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.7e-77 294.7 342 50.6
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 1.4e-76 291.6 377 44.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 5.5e-76 289.7 288 58.3
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 8.8e-66 255.8 243 59.3
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 9.1e-63 245.7 239 57.3
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 2.9e-61 240.7 491 33.4
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.2e-59 235.3 298 40.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.6e-59 233.8 223 59.2
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.8e-58 231.5 210 58.6
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 6.5e-53 213.0 119 87.4
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.7e-48 197.2 118 78.0
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 7.0e-47 193.0 198 51.5
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 2.0e-46 191.4 221 44.8
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.7e-45 188.3 155 67.1
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.3e-42 177.9 156 62.2
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 9.7e-41 172.6 124 73.4
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 6.3e-40 169.9 204 49.0
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 4.1e-39 167.2 101 79.2
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-38 164.9 119 68.9
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.0e-37 160.2 153 56.9
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 5.5e-36 156.8 319 33.9
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.4e-33 147.1 113 69.9
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.4e-31 142.1 115 60.0
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.4e-31 141.4 120 57.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-29 135.6 188 45.2
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-28 131.3 124 62.9
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.2e-28 130.6 316 30.7
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 9.5e-28 129.4 87 75.9
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.1e-27 128.3 87 75.9
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-27 127.9 225 40.0
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 8.3e-24 116.3 65 83.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.4e-23 115.5 112 53.6
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 5.9e-22 110.2 74 77.0
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 8.6e-21 106.3 179 41.9
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.9e-20 105.1 162 39.5
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 5.6e-20 103.6 180 35.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.3e-20 103.2 70 70.0
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.0e-18 99.4 77 71.4
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.2e-18 97.1 77 74.0
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 2.6e-17 94.7 140 43.6
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.7e-16 92.0 78 62.8
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 6.6e-13 80.1 142 38.0
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.6e-11 75.5 49 73.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 8.0e-11 73.2 78 50.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.4e-10 72.4 69 58.0
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 8.9e-10 69.7 48 68.8
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.2e-07 61.2 123 33.3


User provided reference genes

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