Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 6.3e-72 273.9 126 100.0
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.0e-21 107.1 73 63.0
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 5.6e-20 101.3 74 58.1
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 7.3e-20 100.9 74 60.8
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.3e-19 100.1 76 55.3
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.2e-17 93.6 65 61.5
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 3.4e-17 92.0 65 61.5
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 3.4e-17 92.0 73 61.6
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 9.9e-17 90.5 82 52.4
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.3e-16 90.1 59 61.0
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 2.2e-16 89.4 66 63.6
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 2.9e-16 89.0 70 55.7
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 8.4e-16 87.4 73 53.4
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 8.4e-16 87.4 63 55.6
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 5.4e-15 84.7 55 63.6
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.2e-14 83.6 65 53.8
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.2e-14 83.6 59 57.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 1.6e-14 83.2 66 54.5
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 2.1e-14 82.8 59 54.2
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.7e-14 82.4 67 52.2
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 3.5e-14 82.0 68 51.5
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 3.5e-14 82.0 66 54.5
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 7.9e-14 80.9 74 55.4
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 7.9e-14 80.9 60 53.3
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 7.9e-14 80.9 60 53.3
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 7.9e-14 80.9 60 53.3
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.0e-13 80.5 71 50.7
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.3e-13 80.1 70 55.7
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.3e-13 80.1 70 55.7
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-13 80.1 66 53.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-13 80.1 66 53.0
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.7e-13 79.7 52 59.6
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 2.3e-13 79.3 54 61.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 3.0e-13 79.0 61 55.7
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 3.0e-13 79.0 58 53.4
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 3.9e-13 78.6 70 55.7
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 3.9e-13 78.6 70 55.7
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 3.9e-13 78.6 70 55.7
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 3.9e-13 78.6 57 59.6
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 5.1e-13 78.2 63 55.6
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 6.6e-13 77.8 61 54.1
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 8.7e-13 77.4 64 56.2
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-12 77.0 73 49.3
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.5e-12 76.6 57 56.1
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.5e-12 76.6 52 59.6
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 2.5e-12 75.9 60 56.7
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 2.5e-12 75.9 50 60.0
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.5e-12 75.9 52 59.6
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 2.5e-12 75.9 55 52.7
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 3.3e-12 75.5 68 51.5
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 3.3e-12 75.5 65 50.8
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 4.3e-12 75.1 45 62.2
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 4.3e-12 75.1 45 62.2
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 4.3e-12 75.1 45 62.2
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 5.6e-12 74.7 61 55.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.6e-11 73.2 54 61.1
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.6e-11 73.2 56 53.6
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 3.6e-11 72.0 64 51.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 4.8e-11 71.6 70 51.4
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 4.8e-11 71.6 71 52.1
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.2e-11 71.2 52 59.6
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 6.2e-11 71.2 52 59.6
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 6.2e-11 71.2 57 54.4
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 8.1e-11 70.9 55 52.7
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.1e-10 70.5 69 47.8
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.1e-10 70.5 69 47.8
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.4e-10 70.1 63 50.8
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 1.4e-10 70.1 63 54.0
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.8e-10 69.7 58 48.3
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 2.4e-10 69.3 57 56.1
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 3.1e-10 68.9 75 50.7
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 4.0e-10 68.6 48 64.6
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 4.0e-10 68.6 68 50.0
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 6.9e-10 67.8 72 50.0
COL.COLO4_34306 Corchorus olitorius HOM05D007709 ORTHO05D156338 6.9e-10 67.8 36 86.1
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.5e-09 66.6 69 42.0
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.0e-09 66.2 65 44.6
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 2.0e-09 66.2 57 50.9
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.6e-09 65.9 73 42.5
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 4.5e-09 65.1 74 40.5
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.9e-08 62.4 66 43.9
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 8.4e-08 60.8 73 42.5
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 6.0e-06 54.7 58 39.7


User provided reference genes

Program Settings