Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 3.5e-169 598.2 305 100.0
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.1e-117 427.2 313 73.2
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.5e-116 422.2 313 72.5
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.3e-110 403.7 308 71.4
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.5e-106 389.4 308 70.5
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.1e-104 382.5 306 69.6
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.3e-98 362.5 321 64.8
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.0e-68 261.9 225 64.4
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 9.7e-42 174.9 353 39.4
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 7.7e-39 165.2 340 38.5
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.1e-37 161.4 270 41.1
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.2e-36 157.9 285 39.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.7e-36 156.8 274 40.5
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 4.6e-36 156.0 325 36.6
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.9e-36 155.2 274 39.8
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 1.1e-32 144.8 285 37.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.2e-31 141.4 294 38.1
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.6e-31 140.2 257 38.1
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 4.5e-31 139.4 273 37.7
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 4.5e-31 139.4 330 36.4
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 2.2e-30 137.1 308 36.7
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 5.0e-30 136.0 284 36.3
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 5.5e-29 132.5 288 36.8
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 3.6e-28 129.8 314 36.6
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 4.7e-28 129.4 288 36.5
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.0e-27 128.3 284 37.3
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.4e-27 127.9 326 35.6
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 8.8e-27 125.2 259 41.7
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.3e-26 123.2 321 32.7
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 4.4e-26 122.9 271 35.8
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.7e-25 120.9 283 37.1
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 3.7e-25 119.8 281 35.6
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.8e-25 119.4 281 35.2
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 6.3e-25 119.0 302 37.1
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.1e-24 118.2 271 35.1
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.8e-24 117.5 284 35.6
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.2e-23 114.8 251 35.5
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.6e-23 114.4 325 34.2
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.0e-22 111.7 280 34.3
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.3e-22 111.3 331 31.7
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 1.3e-22 111.3 249 33.7
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 2.2e-22 110.5 271 33.2
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 3.8e-22 109.8 227 37.9
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 5.0e-22 109.4 292 33.6
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 6.5e-22 109.0 315 34.3
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.9e-21 107.5 286 31.8
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 5.5e-21 105.9 316 31.6
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 9.4e-21 105.1 212 37.7
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 2.7e-20 103.6 289 31.8
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 2.7e-20 103.6 325 32.3
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 2.7e-20 103.6 357 29.7
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.0e-19 101.7 293 31.4
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 6.7e-19 99.0 314 30.3
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 8.8e-19 98.6 241 34.4
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.5e-18 97.8 299 33.4
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 5.7e-18 95.9 287 32.1
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.8e-16 90.9 299 31.8
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 9.1e-16 88.6 302 31.5
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 3.8e-14 83.2 436 26.6
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 3.8e-14 83.2 193 34.2
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 8.5e-14 82.0 279 31.2
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.1e-13 81.6 103 47.6
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.5e-13 80.5 304 31.6
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 3.2e-13 80.1 267 32.2
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 4.7e-12 76.3 129 43.4
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 5.2e-11 72.8 275 32.4
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.5e-10 71.2 285 29.8
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 2.0e-10 70.9 186 31.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 2.6e-10 70.5 277 28.9
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 5.7e-10 69.3 114 39.5
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 5.7e-10 69.3 313 29.1
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.3e-09 68.2 267 30.0
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 1.3e-09 68.2 161 32.9
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 2.8e-09 67.0 54 61.1
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 1.4e-08 64.7 50 60.0
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 2.4e-08 63.9 287 28.2
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 5.4e-08 62.8 52 55.8
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 9.1e-08 62.0 284 26.8
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.0e-06 58.5 35 60.0
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 1.3e-06 58.2 32 68.8
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.3e-06 58.2 56 42.9
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 1.7e-06 57.8 40 55.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.7e-06 57.8 32 65.6
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.7e-06 57.8 32 65.6
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 2.3e-06 57.4 51 54.9
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 2.9e-06 57.0 53 56.6
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 2.9e-06 57.0 56 55.4
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 2.9e-06 57.0 56 55.4
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 5.0e-06 56.2 166 32.5


User provided reference genes

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