Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 7.5e-46 186.8 93 100.0
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 4.0e-39 164.5 95 88.4
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.2e-38 162.9 90 88.9
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 7.5e-38 160.2 90 86.7
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 1.3e-37 159.5 84 92.9
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.7e-37 159.1 90 87.8
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 3.7e-37 157.9 85 92.9
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 4.9e-37 157.5 90 85.6
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 4.9e-37 157.5 90 85.6
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 6.4e-37 157.1 87 88.5
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.1e-36 156.4 90 86.7
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 1.1e-36 156.4 89 91.0
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 1.1e-36 156.4 89 87.6
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 1.4e-36 156.0 89 85.4
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 1.4e-36 156.0 90 83.3
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.4e-36 155.2 88 89.8
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 5.4e-36 154.1 90 86.7
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 7.0e-36 153.7 89 85.4
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 7.0e-36 153.7 89 84.3
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 1.2e-35 152.9 88 85.2
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 1.2e-35 152.9 90 83.3
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.2e-35 152.9 90 85.6
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 1.6e-35 152.5 90 83.3
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.6e-35 152.5 90 85.6
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.0e-35 152.1 87 87.4
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.7e-35 151.8 89 85.4
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.7e-35 151.8 85 87.1
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 3.5e-35 151.4 88 83.0
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 3.5e-35 151.4 82 90.2
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 6.0e-35 150.6 86 86.0
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.0e-35 150.6 86 86.0
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.0e-35 150.6 86 86.0
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.0e-35 150.6 86 86.0
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 6.0e-35 150.6 90 83.3
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 6.0e-35 150.6 90 82.2
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 6.0e-35 150.6 85 87.1
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 7.8e-35 150.2 87 87.4
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 7.8e-35 150.2 90 84.4
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 7.8e-35 150.2 90 83.3
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.0e-34 149.8 85 90.6
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 1.0e-34 149.8 90 83.3
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.0e-34 149.8 88 87.5
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 1.0e-34 149.8 90 84.4
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 1.0e-34 149.8 90 82.2
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 1.3e-34 149.4 91 84.6
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 1.3e-34 149.4 93 81.7
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.3e-34 149.4 89 86.5
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.3e-34 149.4 87 86.2
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 1.7e-34 149.1 87 86.2
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 2.3e-34 148.7 90 83.3
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.3e-34 148.7 86 84.9
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 3.0e-34 148.3 90 78.9
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 3.0e-34 148.3 90 78.9
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 3.0e-34 148.3 90 78.9
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 3.0e-34 148.3 90 83.3
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 3.0e-34 148.3 90 81.1
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 3.0e-34 148.3 93 80.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.0e-34 148.3 88 80.7
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 3.9e-34 147.9 87 85.1
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.9e-34 147.9 82 86.6
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 3.9e-34 147.9 88 85.2
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 8.6e-34 146.7 88 86.4
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 1.1e-33 146.4 80 87.5
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 1.1e-33 146.4 90 82.2
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.5e-33 146.0 89 82.0
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 1.5e-33 146.0 92 76.1
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 1.5e-33 146.0 93 75.3
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.9e-33 145.6 89 78.7
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.9e-33 145.6 88 83.0
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 2.5e-33 145.2 90 81.1
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 2.5e-33 145.2 90 77.8
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 3.3e-33 144.8 93 78.5
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.3e-33 144.8 87 82.8
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.3e-33 144.8 79 89.9
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 4.3e-33 144.4 88 85.2
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 4.3e-33 144.4 89 84.3
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 4.3e-33 144.4 88 85.2
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 4.3e-33 144.4 88 85.2
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 4.3e-33 144.4 88 85.2
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 5.6e-33 144.1 82 84.1
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 5.6e-33 144.1 90 81.1
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 7.3e-33 143.7 82 84.1
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 7.3e-33 143.7 88 83.0
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 7.3e-33 143.7 85 82.4
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 9.5e-33 143.3 87 81.6
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 2.1e-32 142.1 89 80.9
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 4.7e-32 141.0 82 82.9
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 6.2e-32 140.6 89 79.8
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 6.2e-32 140.6 90 78.9
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 1.1e-31 139.8 82 80.5
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 1.1e-31 139.8 82 80.5
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 1.1e-31 139.8 93 76.3
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 1.1e-31 139.8 79 87.3
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 1.4e-31 139.4 91 75.8
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 1.4e-31 139.4 83 80.7
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.8e-31 139.0 90 77.8
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 1.8e-31 139.0 79 84.8
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 2.3e-31 138.7 105 71.4
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 3.1e-31 138.3 92 76.1
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 6.8e-31 137.1 80 82.5
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 6.8e-31 137.1 82 80.5
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 6.8e-31 137.1 118 64.4
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 2.0e-30 135.6 79 81.0
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.0e-30 135.6 94 74.5
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.0e-30 135.6 94 74.5
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 2.0e-30 135.6 78 83.3
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 2.6e-30 135.2 82 78.0
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 2.6e-30 135.2 103 70.9
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 2.2e-29 132.1 92 70.7
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 4.1e-28 127.9 78 78.2
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.1e-25 119.8 142 51.4
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.1e-25 119.8 143 49.7
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.5e-25 119.4 68 86.8
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 4.3e-25 117.9 78 71.8
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 4.3e-25 117.9 88 63.6
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 2.3e-23 112.1 62 90.3
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 4.0e-23 111.3 65 81.5
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.6e-16 88.2 57 78.9
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.6e-16 88.2 57 78.9
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.6e-16 88.2 57 78.9
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 1.4e-15 86.3 92 50.0
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.4e-12 76.3 49 77.6
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 1.7e-10 69.3 44 77.3


User provided reference genes

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