Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.8e-263 911.4 454 100.0
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.2e-247 858.6 454 93.6
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 6.3e-247 857.1 454 93.6
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.1e-246 856.3 454 93.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.1e-246 854.4 454 93.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-245 852.8 454 93.0
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 3.2e-227 791.6 455 85.7
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.2e-227 791.2 456 86.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.6e-226 788.1 456 86.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 4.7e-226 787.7 454 86.3
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.4e-225 786.2 454 85.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 8.8e-225 783.5 456 85.7
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 8.3e-223 776.9 456 84.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 7.0e-222 773.9 456 83.1
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.7e-221 771.9 456 83.8
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 5.0e-220 767.7 457 83.2
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 2.5e-219 765.4 457 82.9
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.3e-219 765.0 457 83.2
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.1e-218 762.3 448 82.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 2.8e-218 761.9 457 82.3
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.8e-218 761.9 455 82.6
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.6e-218 761.5 457 82.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 2.3e-217 758.8 456 82.5
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.3e-217 758.8 457 82.3
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.0e-217 758.1 454 83.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.7e-215 751.5 456 81.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.9e-215 751.1 455 81.3
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.9e-215 751.1 436 83.9
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.1e-214 750.0 457 82.7
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.2e-213 746.5 451 81.8
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.6e-213 746.1 451 81.6
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.6e-213 746.1 451 81.6
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.7e-213 745.3 457 80.7
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.6e-213 744.6 456 80.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.9e-213 744.2 451 81.2
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.3e-212 743.0 454 81.3
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 5.0e-212 741.1 452 82.3
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.1e-211 740.0 443 82.2
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.5e-211 738.8 444 81.5
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 4.3e-211 738.0 458 79.9
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 4.3e-211 738.0 460 80.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.3e-211 737.3 456 79.2
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 9.5e-211 736.9 453 79.2
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 8.0e-210 733.8 421 84.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-209 732.3 453 79.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.3e-209 732.3 443 80.8
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 4.0e-209 731.5 456 79.4
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 4.0e-209 731.5 443 80.4
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.8e-209 730.7 451 80.5
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 8.9e-209 730.3 442 81.9
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.2e-208 729.9 450 80.4
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.6e-208 728.8 453 79.7
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 4.4e-208 728.0 443 80.8
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.4e-208 728.0 455 80.7
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 4.4e-208 728.0 452 79.2
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 4.4e-208 728.0 456 78.5
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.8e-208 727.6 452 80.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 9.8e-208 726.9 456 78.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 2.2e-207 725.7 451 79.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 2.2e-207 725.7 451 79.8
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 4.9e-207 724.5 451 79.6
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 4.9e-207 724.5 451 79.6
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 4.9e-207 724.5 456 79.6
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.4e-207 724.2 460 78.5
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 8.3e-207 723.8 451 79.6
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.1e-206 723.4 457 78.8
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.1e-206 723.4 447 80.1
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.4e-206 721.1 452 80.1
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 5.4e-206 721.1 454 78.4
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 5.4e-206 721.1 454 78.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 9.2e-206 720.3 458 77.3
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-205 719.9 429 81.8
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.6e-205 719.5 454 77.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.6e-205 718.0 458 79.5
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.3e-204 715.7 452 79.0
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.9e-204 714.9 456 77.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.1e-203 713.4 449 78.8
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.2e-202 709.9 442 81.7
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.2e-202 709.9 431 80.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 4.7e-202 708.0 477 74.8
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 5.2e-201 704.5 446 78.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.6e-200 702.2 457 75.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.4e-200 701.8 455 77.6
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 7.5e-200 700.7 432 79.9
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-199 699.9 435 79.1
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.7e-199 699.5 457 77.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 6.4e-199 697.6 470 75.5
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 7.1e-198 694.1 470 76.2
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.2e-197 693.3 470 75.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.1e-197 692.6 464 76.1
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.7e-197 692.2 455 76.3
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 6.0e-197 691.0 457 75.9
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 5.1e-196 688.0 432 79.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.5e-195 686.4 473 74.2
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 4.3e-195 684.9 460 75.7
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 4.3e-195 684.9 470 74.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 4.3e-195 684.9 470 74.3
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.2e-194 683.3 457 74.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 8.1e-194 680.6 470 73.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 8.9e-193 677.2 454 74.7
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.4e-190 669.8 566 63.1
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 5.4e-190 667.9 450 75.1
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 7.3e-187 657.5 451 72.3
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-186 656.0 458 72.7
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 8.1e-186 654.1 454 72.7
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 2.4e-185 652.5 421 75.3
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.4e-182 642.5 447 72.0
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 4.2e-182 641.7 484 67.6
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.0e-180 637.1 379 81.0
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.7e-180 636.3 454 70.5
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.5e-179 633.3 456 70.2
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.3e-179 632.1 454 70.3
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.1e-178 629.4 439 72.0
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.9e-176 620.5 454 69.2
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.3e-175 620.2 424 71.9
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.9e-174 616.3 452 68.4
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.4e-169 599.4 427 71.0
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.2e-168 597.0 447 67.1
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.0e-168 596.3 456 69.3
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.3e-164 582.8 435 67.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.3e-163 578.9 372 77.7
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.4e-161 572.8 363 78.2
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.8e-153 546.6 398 71.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.1e-147 527.3 458 58.7
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.4e-147 524.6 449 61.5
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 9.7e-147 524.2 364 71.4
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-144 517.3 351 73.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.5e-142 509.6 467 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 2.1e-141 506.5 465 57.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.4e-140 503.8 463 57.5
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.9e-140 502.3 436 60.1
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.4e-134 483.8 311 75.2
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.6e-128 463.8 457 56.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.3e-114 417.5 296 69.9
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.5e-110 402.1 336 62.8
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 3.3e-94 349.7 266 66.5
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 7.3e-94 348.6 255 68.2
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.4e-92 344.4 208 82.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 2.0e-91 340.5 209 79.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 3.2e-81 306.6 428 43.5
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.5e-78 297.0 197 76.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.8e-69 266.9 178 77.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.3e-53 214.9 160 69.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 3.4e-51 206.8 136 75.0
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.7e-40 170.6 230 46.5
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.4e-35 153.7 150 53.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 7.2e-33 146.0 149 54.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-22 112.1 61 90.2
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 8.2e-13 79.3 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 4.4e-06 57.0 88 42.0


User provided reference genes

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