Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 2409.8 1279 100.0
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 2101.6 1237 89.7
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 2029.6 1278 83.6
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 2028.4 1278 84.2
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 2008.8 1286 83.7
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1724.5 1281 72.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1703.0 1224 72.9
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1678.7 1324 68.5
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1662.9 1282 70.2
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1661.4 1282 69.7
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1657.1 1308 68.3
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1655.6 1319 67.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1635.9 1301 67.8
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1634.4 1286 68.9
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1613.6 1355 66.1
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1610.1 1288 68.6
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1610.1 1280 66.9
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1609.0 1225 69.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1602.4 1252 68.1
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1598.9 1281 69.1
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1597.4 1309 66.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1593.6 1348 63.8
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1592.8 1288 65.4
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1588.5 1290 65.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1588.2 1289 66.6
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1585.1 1181 71.5
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1582.8 1279 67.2
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1578.9 1286 67.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1575.5 1315 65.9
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1575.1 1345 64.6
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1573.1 1187 69.4
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1560.4 1298 65.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1559.7 1222 67.8
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1559.3 1280 66.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1557.7 1291 65.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1556.6 1352 63.5
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1538.1 1177 68.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1537.3 1288 65.8
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1535.4 1290 64.3
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1531.5 1306 63.4
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1531.2 1235 66.5
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1531.2 1220 67.0
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1527.3 1215 67.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1527.3 1243 65.6
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1525.0 1291 64.6
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1521.5 1240 65.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1289 65.0
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1520.8 1291 63.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1519.6 1283 64.1
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1517.7 1212 68.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1503.8 1242 66.2
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1498.0 1230 65.2
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1497.3 1293 64.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1491.5 1211 65.5
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1481.8 1300 61.4
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1470.7 1290 62.9
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1466.4 1190 66.1
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1464.5 1298 63.3
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1272 61.3
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1461.8 1310 61.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1458.7 1290 60.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1453.3 1222 66.4
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1453.0 1326 59.5
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1222 64.5
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1449.5 1304 62.4
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1449.1 1285 61.0
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1445.3 1285 62.6
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1284 60.4
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1435.6 1311 61.2
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1316 60.9
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1433.3 1282 62.2
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1433.3 1305 61.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1430.6 1305 61.4
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1429.1 1284 60.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1427.9 1264 61.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1426.8 1267 61.1
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1422.5 1196 64.0
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1417.5 1312 60.1
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1416.0 1321 60.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1409.8 1255 60.2
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1408.3 1319 60.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1403.7 1260 59.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1193 63.4
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1193 63.4
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1394.0 1314 59.5
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1393.6 1224 60.9
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1393.6 1310 59.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1393.3 1220 62.7
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1390.6 1196 63.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1367.4 1358 57.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1248 59.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1328.2 1261 59.0
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1312.0 1263 58.3
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1288.9 1076 63.2
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1285.4 1174 60.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1216.1 1222 55.5
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1201.0 1221 54.9
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1194.9 1246 55.4
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1176.4 1114 59.0
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1174.8 944 68.0
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1162.1 1213 53.9
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1161.7 1237 53.6
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1158.3 1354 49.6
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1157.5 1277 50.9
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1102.4 1259 50.8
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1079.3 748 74.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.6e-293 1011.5 1239 47.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.0e-286 990.7 1227 47.5
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.6e-276 956.8 696 73.4
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.5e-264 916.4 1289 46.5
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 8.5e-233 811.6 1113 44.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 3.4e-189 666.8 536 69.4
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 6.4e-180 636.0 429 74.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 9.0e-174 615.5 814 50.1
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.1e-161 573.2 449 67.9
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.5e-160 571.6 695 51.7
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.5e-160 570.9 536 61.4
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.7e-151 540.4 1215 34.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.1e-150 537.0 1272 33.6
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.6e-146 525.0 1207 33.3
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 7.9e-146 522.7 608 48.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.8e-143 513.5 1247 31.8
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.3e-132 478.8 1231 32.4
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.2e-131 474.2 1128 32.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.0e-113 414.5 1032 33.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.3e-105 388.3 1023 32.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.3e-103 382.5 589 44.3
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.2e-101 375.9 1209 29.3
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.6e-100 370.2 592 43.9
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.4e-86 323.9 331 55.6
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.7e-85 321.6 248 65.7
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.1e-44 184.5 217 47.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.8e-42 178.7 1222 24.5
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.7e-34 152.9 131 65.6
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.3e-34 151.0 348 31.0
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.2e-29 136.7 1264 23.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 3.9e-28 131.7 91 72.5
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.4e-27 127.5 128 53.9
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.5e-23 114.0 121 51.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.2e-21 110.2 187 38.0
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 4.7e-21 108.2 191 38.2
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.4e-20 106.7 143 42.0
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 6.7e-20 104.4 112 55.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 6.3e-18 97.8 74 67.6
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.4e-17 95.9 61 78.7
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 5.5e-14 84.7 72 52.8
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.2e-13 83.6 99 50.5
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.2e-13 83.6 68 60.3
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 3.6e-13 82.0 73 49.3
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.2e-11 77.0 84 42.9
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-11 76.6 52 73.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-11 76.6 52 73.1
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.0e-07 63.9 40 70.0
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 6.5e-07 61.2 76 47.4
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.2e-06 58.5 41 75.6
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 5.5e-06 58.2 49 59.2


User provided reference genes

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