Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 6.7e-94 347.4 187 100.0
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 2.6e-66 255.8 146 93.2
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 7.7e-66 254.2 147 93.2
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.3e-65 253.4 146 89.0
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.3e-65 253.4 146 89.0
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.2e-64 248.4 147 91.8
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.2e-64 248.4 147 91.8
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 5.5e-64 248.1 147 86.4
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.6e-63 246.5 147 91.2
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 2.7e-63 245.7 146 87.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.6e-63 245.4 147 87.1
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 3.6e-63 245.4 147 87.1
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 6.1e-63 244.6 147 88.4
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 8.0e-63 244.2 147 86.4
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.8e-62 243.0 146 86.3
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 2.3e-62 242.7 164 79.9
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 4.0e-62 241.9 146 86.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 6.7e-62 241.1 146 87.0
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 8.8e-62 240.7 146 86.3
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 8.8e-62 240.7 146 87.0
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 8.8e-62 240.7 147 85.7
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.5e-61 240.0 144 84.7
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.5e-61 240.0 144 84.7
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.5e-61 240.0 144 84.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.0e-61 239.6 144 84.7
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.0e-61 239.6 146 84.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.0e-61 239.6 146 84.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.3e-61 238.8 146 85.6
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.3e-61 238.8 146 85.6
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.3e-61 238.8 146 85.6
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.3e-61 238.8 144 84.0
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 3.3e-61 238.8 146 84.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 4.4e-61 238.4 146 84.9
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 5.7e-61 238.0 145 86.2
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 9.7e-61 237.3 146 84.9
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.3e-60 234.6 146 84.2
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 6.3e-60 234.6 146 83.6
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 8.2e-60 234.2 146 82.9
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 8.2e-60 234.2 168 76.8
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.8e-59 233.0 146 85.6
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.4e-59 232.6 146 84.9
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 4.1e-59 231.9 146 82.9
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 9.1e-59 230.7 147 83.0
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 3.5e-58 228.8 155 81.3
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.5e-58 228.8 146 80.8
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 5.9e-58 228.0 147 83.0
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 7.7e-58 227.6 147 82.3
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.0e-57 227.3 147 80.3
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.0e-57 227.3 147 80.3
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.3e-57 226.9 147 81.0
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 2.2e-57 226.1 147 81.6
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.9e-57 225.7 144 79.9
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.1e-56 223.8 148 79.1
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.9e-56 223.0 146 78.1
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.9e-56 223.0 148 79.7
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.2e-56 222.2 147 79.6
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 5.5e-56 221.5 146 78.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 5.5e-56 221.5 146 80.1
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.5e-56 221.5 146 76.7
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.2e-56 221.1 146 78.1
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 7.2e-56 221.1 147 79.6
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 9.4e-56 220.7 145 80.7
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.2e-55 220.3 149 77.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.6e-55 219.9 146 76.7
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.6e-55 219.9 146 81.5
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.6e-55 219.9 148 79.1
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.6e-55 219.9 144 79.9
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 2.7e-55 219.2 147 79.6
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 6.1e-55 218.0 147 76.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.0e-54 217.2 146 78.1
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.4e-54 216.9 146 77.4
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.3e-54 216.1 157 73.2
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 2.3e-54 216.1 146 76.7
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 4.0e-54 215.3 170 70.6
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 5.2e-54 214.9 146 78.1
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 6.8e-54 214.5 153 75.2
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 2.6e-53 212.6 149 77.2
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.6e-53 212.6 146 76.0
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 7.5e-53 211.1 147 77.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.3e-52 210.3 139 79.9
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-52 210.3 147 78.2
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.7e-52 209.9 150 80.0
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 6.3e-52 208.0 174 66.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.8e-51 206.5 146 78.1
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.0e-51 204.5 146 77.4
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-50 203.8 146 77.4
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.0e-50 203.0 152 77.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.7e-50 202.6 150 73.3
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.5e-50 201.8 148 73.0
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.0e-49 200.7 150 72.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.0e-49 200.7 150 72.0
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 2.2e-49 199.5 149 71.1
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.5e-48 196.8 152 71.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 7.2e-48 194.5 150 68.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 7.2e-48 194.5 194 60.8
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 4.7e-47 191.8 152 70.4
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 6.1e-47 191.4 154 68.8
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.0e-46 190.7 153 68.0
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 4.0e-46 188.7 153 69.3
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 5.2e-46 188.3 119 81.5
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.2e-45 187.2 154 68.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 9.8e-45 184.1 147 68.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.8e-44 182.6 147 68.0
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 5.4e-43 178.3 153 66.0
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.7e-41 173.3 166 59.6
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.9e-41 172.6 112 82.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 6.6e-41 171.4 139 68.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 6.6e-41 171.4 139 68.3
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 8.6e-41 171.0 149 62.4
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.2e-40 167.9 109 82.6
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.8e-39 166.0 149 63.8
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.4e-38 163.7 139 68.3
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 2.3e-38 162.9 100 83.0
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.2e-38 161.8 105 79.0
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 8.9e-38 161.0 147 62.6
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.3e-36 157.1 150 60.7
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 4.9e-36 155.2 147 61.9
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 3.2e-35 152.5 145 60.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 1.9e-32 143.3 133 63.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 6.2e-31 138.3 97 76.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 7.5e-29 131.3 103 66.0
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 7.5e-29 131.3 103 66.0
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.7e-28 130.2 152 52.0
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.1e-27 125.6 86 75.6
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 7.8e-26 121.3 133 51.9
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 1.0e-25 120.9 151 47.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 6.2e-23 111.7 166 45.8
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.1e-19 100.9 78 66.7
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 4.1e-19 99.0 71 74.6
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.2e-18 97.4 88 61.4
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 2.1e-18 96.7 79 60.8
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 2.7e-18 96.3 79 58.2
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 6.0e-18 95.1 144 45.8
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.7e-17 93.6 71 67.6
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.1e-17 92.0 69 66.7
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.1e-17 92.0 71 64.8
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.1e-17 92.0 71 64.8
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.6e-17 91.7 69 66.7
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.6e-17 91.3 69 62.3
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.6e-17 91.3 69 65.2
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 4.3e-16 89.0 147 39.5
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.7e-12 75.9 73 54.8
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 1.1e-11 74.3 73 54.8
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.1e-10 70.1 125 44.0
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 1.5e-08 63.9 70 47.1
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 9.6e-08 61.2 72 47.2
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 6.2e-07 58.5 72 43.1
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 5.2e-06 55.5 51 60.8


User provided reference genes

Program Settings