Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 3.8e-45 184.5 94 100.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.2e-32 140.6 93 76.3
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.4e-31 139.4 93 76.3
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.8e-31 139.0 93 76.3
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.4e-29 130.2 94 71.3
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 6.0e-19 97.4 71 66.2
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 7.9e-19 97.1 71 69.0
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.0e-18 96.7 71 67.6
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.3e-18 96.3 71 67.6
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.8e-18 95.9 71 69.0
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.8e-18 95.9 71 69.0
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.8e-18 95.9 71 69.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.3e-18 95.5 71 67.6
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 2.3e-18 95.5 71 66.2
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.0e-18 95.1 71 67.6
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 3.0e-18 95.1 71 67.6
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 3.0e-18 95.1 71 66.2
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 3.9e-18 94.7 71 66.2
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.9e-18 94.7 71 64.8
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.9e-18 94.7 71 64.8
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 5.1e-18 94.4 71 66.2
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 5.1e-18 94.4 71 66.2
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 5.1e-18 94.4 71 66.2
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 5.1e-18 94.4 71 66.2
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 5.1e-18 94.4 71 67.6
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 6.7e-18 94.0 71 66.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 6.7e-18 94.0 71 64.8
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 6.7e-18 94.0 71 64.8
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 8.7e-18 93.6 71 64.8
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 8.7e-18 93.6 71 66.2
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.1e-17 93.2 71 64.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.1e-17 93.2 71 64.8
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.1e-17 93.2 71 66.2
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.1e-17 93.2 71 64.8
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.5e-17 92.8 71 63.4
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.5e-17 92.8 71 63.4
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.5e-17 92.8 71 64.8
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.5e-17 92.8 71 64.8
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 1.5e-17 92.8 71 64.8
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.9e-17 92.4 71 64.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.9e-17 92.4 71 66.2
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 1.9e-17 92.4 71 66.2
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.9e-17 92.4 71 66.2
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-17 92.0 71 64.8
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 2.5e-17 92.0 71 63.4
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.5e-17 92.0 71 64.8
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 4.3e-17 91.3 71 63.4
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 5.7e-17 90.9 71 63.4
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.7e-17 90.9 71 63.4
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.7e-17 90.9 71 63.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.7e-17 90.9 71 60.6
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 5.7e-17 90.9 71 63.4
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 7.4e-17 90.5 71 62.0
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 7.4e-17 90.5 71 64.8
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 9.7e-17 90.1 71 62.0
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 9.7e-17 90.1 71 63.4
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 9.7e-17 90.1 71 63.4
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 9.7e-17 90.1 71 63.4
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 60.6
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 62.0
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 63.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 63.4
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 63.4
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 1.3e-16 89.7 71 64.8
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.3e-16 89.7 73 61.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.6e-16 89.4 71 63.4
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.6e-16 89.4 71 60.6
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.6e-16 89.4 71 62.0
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.8e-16 88.6 71 62.0
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 2.8e-16 88.6 71 63.4
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.8e-16 88.6 71 64.8
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 2.8e-16 88.6 71 63.4
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 2.8e-16 88.6 71 60.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.7e-16 88.2 71 62.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.7e-16 88.2 71 62.0
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 3.7e-16 88.2 71 59.2
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 3.7e-16 88.2 71 60.6
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 3.7e-16 88.2 71 60.6
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 4.8e-16 87.8 71 60.6
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 6.3e-16 87.4 71 60.6
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 6.3e-16 87.4 71 60.6
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 6.3e-16 87.4 71 63.4
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 6.3e-16 87.4 71 62.0
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 8.2e-16 87.0 71 60.6
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.1e-15 86.7 71 60.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.1e-15 86.7 71 60.6
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 1.1e-15 86.7 71 60.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.1e-15 86.7 71 62.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.1e-15 86.7 71 62.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.1e-15 86.7 71 59.2
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.4e-15 86.3 71 60.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.4e-15 85.5 71 59.2
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 3.1e-15 85.1 71 59.2
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 3.1e-15 85.1 71 60.6
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 3.1e-15 85.1 71 59.2
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.1e-15 84.7 67 65.7
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.3e-15 84.3 71 62.0
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.3e-15 84.3 71 62.0
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.3e-15 84.3 71 62.0
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.9e-15 84.0 71 56.3
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 9.0e-15 83.6 71 56.3
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 9.0e-15 83.6 71 57.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.2e-14 83.2 71 57.7
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.2e-14 83.2 71 54.9
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.2e-14 83.2 71 59.2
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.5e-14 82.8 71 60.6
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.5e-14 82.8 71 60.6
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.0e-14 82.4 71 56.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.0e-14 82.4 71 56.3
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 2.6e-14 82.0 71 59.2
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.6e-14 82.0 71 56.3
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.6e-14 82.0 71 56.3
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-14 81.6 67 64.2
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 4.5e-14 81.3 73 56.2
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.9e-14 80.9 71 59.2
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.3e-13 79.7 71 56.3
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.7e-13 79.3 71 57.7
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.7e-13 79.3 71 56.3
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 5.0e-13 77.8 71 53.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 6.5e-13 77.4 71 52.1
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 6.5e-13 77.4 71 54.9
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.6e-11 72.8 71 53.5
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 3.6e-11 71.6 72 50.0
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.6e-11 71.2 71 54.9
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 6.1e-11 70.9 71 53.5
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.0e-10 70.1 67 50.7
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.8e-10 69.3 72 51.4
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 3.0e-10 68.6 62 58.1
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.5e-09 66.2 69 49.3
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 5.7e-09 64.3 69 47.8
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 9.7e-09 63.5 72 48.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.2e-08 62.4 78 43.6
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 3.7e-08 61.6 89 40.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 8.2e-08 60.5 98 39.8
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.4e-07 59.7 51 58.8
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 2.4e-07 58.9 69 44.9
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 2.0e-06 55.8 52 53.8
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 3.4e-06 55.1 36 69.4


User provided reference genes

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