Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G122700 Theobroma cacao HOM05D011181 ORTHO05D011525 7.4e-167 590.5 307 100.0
Duzib052G1011 Durio zibethinus HOM05D011181 ORTHO05D011525 3.5e-84 315.8 326 60.1
COL.COLO4_32451 Corchorus olitorius HOM05D011181 ORTHO05D011525 1.2e-34 151.4 297 42.4
Cfa004979 Carpinus fangiana HOM05D013780 ORTHO05D011525 5.9e-15 85.9 152 40.8
Ca_12491_v3 Cicer arietinum L. HOM05D011181 ORTHO05D011525 3.3e-13 80.1 172 37.2
FAN24G1050 Fragaria x ananassa HOM05D013780 ORTHO05D011525 3.3e-13 80.1 202 35.6
Prupe.8G102100 Prunus persica HOM05D013780 ORTHO05D011525 2.1e-12 77.4 163 40.5
TPR.G18578 Trifolium pratense HOM05D011181 ORTHO05D011525 2.8e-12 77.0 154 42.9
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 2.8e-12 77.0 117 41.9
FvH4_2g08260 Fragaria vesca HOM05D013780 ORTHO05D011525 4.7e-12 76.3 201 34.8
Glyma.20G007700 Glycine max HOM05D011181 ORTHO05D011525 4.0e-11 73.2 285 29.1
QL11p042781 Quercus lobata HOM05D013780 ORTHO05D011525 5.2e-11 72.8 273 31.5
Medtr1g034500 Medicago truncatula HOM05D011181 ORTHO05D011525 6.8e-11 72.4 176 35.8
Medtr2g045670 Medicago truncatula HOM05D011181 ORTHO05D011525 6.8e-11 72.4 178 36.0
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.0e-10 70.9 80 48.8
Lalb_Chr17g0338181 Lupinus albus HOM05D011181 ORTHO05D011525 3.4e-10 70.1 157 35.7
Haze_02410 Corylus avellana HOM05D013780 ORTHO05D011525 2.2e-09 67.4 202 32.2
CSS0014012 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 2.9e-09 67.0 91 49.5
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 2.9e-09 67.0 78 48.7
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 3.7e-09 66.6 203 34.5
Pp3c18_19240 Physcomitrium patens HOM05D001459 ORTHO05D001359 4.9e-09 66.2 88 46.6
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 4.9e-09 66.2 360 28.1
arahy.Tifrunner.gnm1.ann1.KB1QEP Arachis hypogaea HOM05D001459 ORTHO05D001359 8.3e-09 65.5 94 47.9
VMungo1215G3207 Vigna mungo HOM05D011181 ORTHO05D011525 8.3e-09 65.5 176 32.4
Aqoxy3G04023 Aquilegia oxysepala HOM05D001459 ORTHO05D001359 1.1e-08 65.1 93 45.2
Migut.H00187 Erythranthe guttata HOM05D001459 ORTHO05D001359 1.1e-08 65.1 260 32.7
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 1.1e-08 65.1 182 33.5
Gorai.003G185700 Gossypium raimondii HOM05D001459 ORTHO05D001359 1.9e-08 64.3 101 40.6
Atru.chr3.534 Acer truncatum HOM05D001459 ORTHO05D001359 2.4e-08 63.9 98 39.8
Gohir.D03G176500 Gossypium hirsutum HOM05D001459 ORTHO05D001359 2.4e-08 63.9 101 40.6
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 2.4e-08 63.9 309 28.8
TWI09G0088 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 2.4e-08 63.9 117 35.0
TAR366G0001 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.4e-08 63.9 115 41.7
Duzib264G0166 Durio zibethinus HOM05D001459 ORTHO05D001359 3.2e-08 63.5 108 38.0
Sopen08g001310 Solanum pennellii HOM05D001459 ORTHO05D001359 3.2e-08 63.5 118 39.0
arahy.Tifrunner.gnm1.ann1.Z1Y8P7 Arachis hypogaea HOM05D001459 ORTHO05D001359 4.1e-08 63.2 94 46.8
Pp3c21_5710 Physcomitrium patens HOM05D001459 ORTHO05D001359 4.1e-08 63.2 95 43.2
Pp3c21_5770 Physcomitrium patens HOM05D001459 ORTHO05D001359 4.1e-08 63.2 95 43.2
CSS0041697 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 5.4e-08 62.8 101 40.6
FvH4_5g23200 Fragaria vesca HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
FAN04G0112 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
FAN13G2632 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
FAN18G3381 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
FAN18G3520 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
Lj2g0002677 Lotus japonicus HOM05D011181 ORTHO05D011525 5.4e-08 62.8 86 47.7
Medtr2g045700 Medicago truncatula HOM05D011181 ORTHO05D011525 5.4e-08 62.8 174 32.8
RcHm_v2.0_Chr7g0212131 Rosa chinensis HOM05D001459 ORTHO05D001359 5.4e-08 62.8 81 46.9
Medtr5g028850 Medicago truncatula HOM05D001459 ORTHO05D001359 7.0e-08 62.4 97 40.2
Psat6g097640 Pisum sativum HOM05D011181 ORTHO05D011525 7.0e-08 62.4 157 35.7
CAN.G137.28 Capsicum annuum HOM05D001459 ORTHO05D001359 9.2e-08 62.0 125 37.6
CiPaw.12G068800 Carya illinoinensis HOM05D001459 ORTHO05D001359 9.2e-08 62.0 95 42.1
Gohir.A03G000030 Gossypium hirsutum HOM05D001459 ORTHO05D001359 9.2e-08 62.0 101 39.6
Manes.15G191900 Manihot esculenta HOM05D001459 ORTHO05D001359 9.2e-08 62.0 101 38.6
Nn1g01783 Nelumbo nucifera HOM05D002964 ORTHO05D003498 9.2e-08 62.0 100 42.0
Zm00001eb411700 Zea mays HOM05D001459 ORTHO05D001359 9.2e-08 62.0 167 37.7
Migut.A00608 Erythranthe guttata HOM05D001459 ORTHO05D001359 1.2e-07 61.6 101 38.6
Thecc.03G311000 Theobroma cacao HOM05D001459 ORTHO05D001359 1.2e-07 61.6 95 42.1
Ca_25167_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 1.6e-07 61.2 94 41.5
Haze_15122 Corylus avellana HOM05D001459 ORTHO05D001359 1.6e-07 61.2 86 44.2
Dinv36055 Davidia involucrata HOM05D001459 ORTHO05D001359 1.6e-07 61.2 78 41.0
SalBow3G2159 Salvia bowleyana HOM05D002964 ORTHO05D003498 1.6e-07 61.2 102 39.2
Solyc08g005290.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.6e-07 61.2 123 38.2
Dinv26808 Davidia involucrata HOM05D001459 ORTHO05D001359 2.0e-07 60.8 63 54.0
PSO170G2342 Papaver somniferum HOM05D001459 ORTHO05D001359 2.0e-07 60.8 78 44.9
RcHm_v2.0_Chr6g0263141 Rosa chinensis HOM05D013780 ORTHO05D011525 2.0e-07 60.8 178 36.0
TAR629G1385 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.0e-07 60.8 77 54.5
Peaxi162Scf00045g00325 Petunia axillaris HOM05D001459 ORTHO05D001359 2.7e-07 60.5 95 42.1
Sabra03G0066100 Salix brachista HOM05D001515 ORTHO05D001359 2.7e-07 60.5 105 41.9
Hund27225 Selenicereus undatus HOM05D002964 ORTHO05D003498 2.7e-07 60.5 105 41.0
GSVIVG01009665001 Vitis vinifera HOM05D001459 ORTHO05D001359 2.7e-07 60.5 80 45.0
DCAR_022100 Daucus carota HOM05D001459 ORTHO05D011525 3.5e-07 60.1 89 42.7
MD10G1080800 Malus domestica HOM05D013780 ORTHO05D011525 3.5e-07 60.1 84 45.2
PRCOL_00000180 Prasinoderma coloniale HOM05D001459 ORTHO05D001359 3.5e-07 60.1 105 37.1
FAN08G0121 Fragaria x ananassa HOM05D001459 ORTHO05D001359 4.6e-07 59.7 79 46.8
Glyma.01G013600 Glycine max HOM05D001459 ORTHO05D001359 4.6e-07 59.7 95 40.0
Mapoly0015s0005 Marchantia polymorpha HOM05D001459 ORTHO05D001359 4.6e-07 59.7 73 47.9
Peaxi162Scf00427g00516 Petunia axillaris HOM05D001459 ORTHO05D001359 4.6e-07 59.7 317 28.1
Actinidia14776 Actinidia chinensis HOM05D001459 ORTHO05D001359 6.0e-07 59.3 102 38.2
Actinidia36544 Actinidia chinensis HOM05D001459 ORTHO05D001359 6.0e-07 59.3 80 45.0
Lj2g0012038 Lotus japonicus HOM05D001459 ORTHO05D001359 6.0e-07 59.3 94 39.4
MBI16_g37292_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 6.0e-07 59.3 78 46.2
Nitab4.5_0000556g0270 Nicotiana tabacum HOM05D001459 ORTHO05D001359 6.0e-07 59.3 95 41.1
Rhsim07G0132900 Rhododendron simsii HOM05D001459 ORTHO05D001359 6.0e-07 59.3 105 40.0
SEGI_34798 Sequoiadendron giganteum HOM05D001459 ORTHO05D001359 6.0e-07 59.3 73 47.9
TPR.G10365 Trifolium pratense HOM05D001459 ORTHO05D001359 6.0e-07 59.3 94 39.4
vmacro22521 Vaccinium macrocarpon HOM05D002964 ORTHO05D003498 6.0e-07 59.3 105 38.1
VMungo1215G1612 Vigna mungo HOM05D001459 ORTHO05D001359 6.0e-07 59.3 91 40.7
Dinv25272 Davidia involucrata HOM05D001459 ORTHO05D001359 7.8e-07 58.9 101 37.6
Dinv42088 Davidia involucrata HOM05D001459 ORTHO05D045162 7.8e-07 58.9 348 26.1
Glyma.09G208500 Glycine max HOM05D001459 ORTHO05D001359 7.8e-07 58.9 96 40.6
Lalb_Chr16g0381001 Lupinus albus HOM05D001459 ORTHO05D001359 7.8e-07 58.9 94 39.4
Pp3c18_16260 Physcomitrium patens HOM05D001459 ORTHO05D001359 7.8e-07 58.9 201 31.3
TPR.G28598 Trifolium pratense HOM05D001459 ORTHO05D001359 7.8e-07 58.9 94 39.4
HPP92_015913 Vanilla planifolia HOM05D001459 ORTHO05D001359 7.8e-07 58.9 81 45.7
HPP92_015942 Vanilla planifolia HOM05D001459 ORTHO05D001359 7.8e-07 58.9 81 45.7
DCAR_008218 Daucus carota HOM05D001459 ORTHO05D001359 1.0e-06 58.5 93 39.8
Duzib147G1182 Durio zibethinus HOM05D001459 ORTHO05D001359 1.0e-06 58.5 102 36.3
HanXRQChr11g0324881 Helianthus annuus HOM05D001459 ORTHO05D001359 1.0e-06 58.5 62 51.6
Lj4g0008832 Lotus japonicus HOM05D001459 ORTHO05D001359 1.0e-06 58.5 106 37.7
Atru.chr6.1535 Acer truncatum HOM05D001459 ORTHO05D001359 1.3e-06 58.2 101 37.6
arahy.Tifrunner.gnm1.ann1.R46QP0 Arachis hypogaea HOM05D011181 ORTHO05D011525 1.3e-06 58.2 177 36.7
CANSAT01G1094 Cannabis sativa HOM05D001459 ORTHO05D001359 1.3e-06 58.2 177 31.1
FAN01G2403 Fragaria x ananassa HOM05D002964 ORTHO05D003498 1.3e-06 58.2 68 47.1
Gohir.A11G093900 Gossypium hirsutum HOM05D002964 ORTHO05D003498 1.3e-06 58.2 81 42.0
Gorai.007G105100 Gossypium raimondii HOM05D002964 ORTHO05D003498 1.3e-06 58.2 81 42.0
Lsat_1_v5_gn_5_62340 Lactuca sativa HOM05D001459 ORTHO05D001359 1.3e-06 58.2 98 41.8
Lalb_Chr05g0215701 Lupinus albus HOM05D001459 ORTHO05D001359 1.3e-06 58.2 87 40.2
QL12p001122 Quercus lobata HOM05D001459 ORTHO05D001359 1.3e-06 58.2 95 42.1
SMO339G0025 Selaginella moellendorffii HOM05D001459 ORTHO05D001359 1.3e-06 58.2 75 46.7
MSTRG.17316 Avicennia marina HOM05D002964 ORTHO05D003498 1.7e-06 57.8 102 39.2
EL10Ac6g14910 Beta vulgaris HOM05D001459 ORTHO05D001359 1.7e-06 57.8 177 35.0
CSS0044644 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 1.7e-06 57.8 86 41.9
ECA246G3405 Erigeron canadensis HOM05D001788 ORTHO05D006995 1.7e-06 57.8 80 42.5
Hma1.2p1_0384F.1_g140960 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 1.7e-06 57.8 79 44.3
MD16G1279200 Malus domestica HOM05D001459 ORTHO05D001359 1.7e-06 57.8 95 38.9
PSO063G5354 Papaver somniferum HOM05D001459 ORTHO05D001359 1.7e-06 57.8 73 47.9
PSO782G4644 Papaver somniferum HOM05D001459 ORTHO05D001359 1.7e-06 57.8 73 47.9
PGR042G1020 Punica granatum HOM05D001459 ORTHO05D001359 1.7e-06 57.8 103 39.8
Sed0018793 Sechium edule HOM05D002964 ORTHO05D003498 1.7e-06 57.8 73 45.2
Zm00001eb133640 Zea mays HOM05D001459 ORTHO05D001359 1.7e-06 57.8 159 35.8
Aa31LG6G13540 Aethionema arabicum HOM05D001459 ORTHO05D001359 2.3e-06 57.4 326 27.0
Ca_09488_v3 Cicer arietinum L. HOM05D002964 ORTHO05D003498 2.3e-06 57.4 126 32.5
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.3e-06 57.4 85 41.2
Eucgr.H01256 Eucalyptus grandis HOM05D001459 ORTHO05D001359 2.3e-06 57.4 80 43.8
Lj7C504T14 Lonicera japonica HOM05D002964 ORTHO05D003498 2.3e-06 57.4 125 34.4
MBI04_g20972_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 2.3e-06 57.4 73 47.9
GSVIVG01027040001 Vitis vinifera HOM05D002964 ORTHO05D003498 2.3e-06 57.4 97 40.2
Atru.chr5.613 Acer truncatum HOM05D002964 ORTHO05D003498 3.0e-06 57.0 68 45.6
BcaB01g03232 Brassica carinata HOM05D002964 ORTHO05D003498 3.0e-06 57.0 73 43.8
A05p10210 Brassica napus HOM05D001459 ORTHO05D001359 3.0e-06 57.0 74 41.9
Ciclev10001333m.g Citrus clementina HOM05D001459 ORTHO05D001359 3.0e-06 57.0 93 38.7
Duzib068G0264 Durio zibethinus HOM05D001459 ORTHO05D001359 3.0e-06 57.0 95 37.9
Duzib205G1077 Durio zibethinus HOM05D001459 ORTHO05D001359 3.0e-06 57.0 101 37.6
FvH4_7g15810 Fragaria vesca HOM05D002964 ORTHO05D003498 3.0e-06 57.0 68 45.6
FAN03G0643 Fragaria x ananassa HOM05D002964 ORTHO05D003498 3.0e-06 57.0 95 38.9
FAN06G1730 Fragaria x ananassa HOM05D002964 ORTHO05D003498 3.0e-06 57.0 95 38.9
FAN06G4642 Fragaria x ananassa HOM05D002964 ORTHO05D003498 3.0e-06 57.0 95 38.9
Hma1.2p1_0077F.1_g039840 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 3.0e-06 57.0 68 45.6
Lj2A229T41 Lonicera japonica HOM05D001459 ORTHO05D001359 3.0e-06 57.0 101 35.6
Medtr8g028150 Medicago truncatula HOM05D002964 ORTHO05D003498 3.0e-06 57.0 199 26.6
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.0e-06 57.0 73 46.6
Ah.05g179930 Amaranthus hybridus HOM05D002964 ORTHO05D003498 3.9e-06 56.6 95 41.1
HanXRQChr17g0537931 Helianthus annuus HOM05D001459 ORTHO05D001359 3.9e-06 56.6 81 42.0
MBI13_g04497_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 3.9e-06 56.6 89 41.6
Nn7g37373 Nelumbo nucifera HOM05D002964 ORTHO05D003498 3.9e-06 56.6 115 33.9
THA.LOC104817330 Tarenaya hassleriana HOM05D002964 ORTHO05D003498 3.9e-06 56.6 68 47.1
ATR0829G146 Amborella trichopoda HOM05D001459 ORTHO05D001359 5.0e-06 56.2 66 50.0
BcaC01g05084 Brassica carinata HOM05D002964 ORTHO05D003498 5.0e-06 56.2 71 45.1
BcaC01g05086 Brassica carinata HOM05D002964 ORTHO05D003498 5.0e-06 56.2 71 45.1
CSS0008805 Camellia sinensis var. sinensis HOM05D002964 ORTHO05D003498 5.0e-06 56.2 97 40.2
CiPaw.11G098900 Carya illinoinensis HOM05D001459 ORTHO05D001359 5.0e-06 56.2 95 38.9
Glyma.16G029000 Glycine max HOM05D002964 ORTHO05D003498 5.0e-06 56.2 79 41.8
Gohir.D12G065600 Gossypium hirsutum HOM05D001459 ORTHO05D001359 5.0e-06 56.2 94 37.2
Nitab4.5_0000305g0190 Nicotiana tabacum HOM05D002964 ORTHO05D003498 5.0e-06 56.2 80 41.2
PGSC0003DMG400018469 Solanum tuberosum HOM05D001459 ORTHO05D001359 5.0e-06 56.2 103 39.8
TAR375G0177 Trochodendron aralioides HOM05D002964 ORTHO05D003498 5.0e-06 56.2 113 36.3
VMungo0251G1353 Vigna mungo HOM05D001459 ORTHO05D001359 5.0e-06 56.2 87 41.4
FAN28G1442 Fragaria x ananassa HOM05D001459 ORTHO05D001359 6.6e-06 55.8 80 43.8
Gohir.A12G065466 Gossypium hirsutum HOM05D001459 ORTHO05D001359 6.6e-06 55.8 100 36.0
Gorai.001G251000 Gossypium raimondii HOM05D000754 ORTHO05D000169 6.6e-06 55.8 91 41.8
Lalb_Chr10g0100161 Lupinus albus HOM05D002964 ORTHO05D003498 6.6e-06 55.8 68 47.1
Lalb_Chr17g0342241 Lupinus albus HOM05D002964 ORTHO05D003498 6.6e-06 55.8 96 39.6
MD07G1143800 Malus domestica HOM05D002964 ORTHO05D003498 6.6e-06 55.8 68 45.6
Os07g0209800 Oryza sativa ssp. japonica HOM05D001459 ORTHO05D001359 6.6e-06 55.8 77 44.2
Phvul.002G136000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 6.6e-06 55.8 97 38.1
RcHm_v2.0_Chr1g0358601 Rosa chinensis HOM05D002964 ORTHO05D003498 6.6e-06 55.8 110 35.5
BraA05t19961Z Brassica rapa HOM05D001459 ORTHO05D001359 8.6e-06 55.5 72 41.7
CSS0046846 Camellia sinensis var. sinensis HOM05D002964 ORTHO05D003498 8.6e-06 55.5 90 41.1
ECA240G2874 Erigeron canadensis HOM05D001459 ORTHO05D001359 8.6e-06 55.5 122 33.6
Eucgr.E00078 Eucalyptus grandis HOM05D002964 ORTHO05D003498 8.6e-06 55.5 87 39.1
HanXRQChr07g0199191 Helianthus annuus HOM05D013780 ORTHO05D011525 8.6e-06 55.5 72 45.8
Hma1.2p1_0870F.1_g230920 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 8.6e-06 55.5 93 37.6
Lsat_1_v5_gn_3_20761 Lactuca sativa HOM05D001459 ORTHO05D001359 8.6e-06 55.5 89 41.6
Manes.15G192000 Manihot esculenta HOM05D001459 ORTHO05D001359 8.6e-06 55.5 101 35.6
Oeu027098.1 Olea europaea HOM05D001459 ORTHO05D001359 8.6e-06 55.5 118 35.6
Psat0s1431g0080 Pisum sativum HOM05D001459 ORTHO05D001359 8.6e-06 55.5 80 42.5
SalBow8G0914 Salvia bowleyana HOM05D000754 ORTHO05D000169 8.6e-06 55.5 89 42.7
Hund14381 Selenicereus undatus HOM05D001459 ORTHO05D001359 8.6e-06 55.5 96 40.6


User provided reference genes

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