Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G122200 Theobroma cacao HOM05D001848 ORTHO05D001295 5.5e-53 210.7 106 100.0
COL.COLO4_32457 Corchorus olitorius HOM05D001848 ORTHO05D001295 8.3e-41 170.2 108 76.9
Gohir.D13G046900 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.1e-37 159.8 107 68.2
Gorai.013G052600 Gossypium raimondii HOM05D001848 ORTHO05D001295 1.9e-37 159.1 107 72.0
Gohir.A13G048500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.6e-36 156.0 107 71.0
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 2.8e-28 128.6 106 55.7
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 5.2e-27 124.4 105 56.2
Eucgr.I01246 Eucalyptus grandis HOM05D001848 ORTHO05D001295 3.5e-23 111.7 107 52.3
CiPaw.05G061200 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.3e-22 109.8 108 54.6
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.9e-21 105.9 106 49.1
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 4.7e-20 101.3 108 50.0
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 8.1e-20 100.5 106 44.3
FvH4_2g08190 Fragaria vesca HOM05D001848 ORTHO05D001295 1.1e-19 100.1 114 52.6
FAN15G2768 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.1e-19 100.1 114 52.6
FAN24G2131 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.1e-19 100.1 114 52.6
Manes.15G148400 Manihot esculenta HOM05D001848 ORTHO05D001295 3.1e-19 98.6 111 48.6
FAN27G0192 Fragaria x ananassa HOM05D001848 ORTHO05D001295 5.2e-19 97.8 114 51.8
MD10G1081500 Malus domestica HOM05D001848 ORTHO05D001295 2.6e-18 95.5 109 49.5
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 3.4e-18 95.1 108 47.2
Psat7g184840 Pisum sativum HOM05D001848 ORTHO05D001295 5.8e-18 94.4 107 43.0
RcHm_v2.0_Chr6g0262971 Rosa chinensis HOM05D001848 ORTHO05D001295 9.8e-18 93.6 113 48.7
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.7e-17 92.8 107 43.0
Nn1g08244 Nelumbo nucifera HOM05D001848 ORTHO05D001295 2.9e-17 92.0 106 44.3
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 2.9e-17 92.0 110 47.3
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 6.4e-17 90.9 109 45.0
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 6.4e-17 90.9 108 46.3
Potri.T125404 Populus trichocarpa HOM05D001848 ORTHO05D001295 6.4e-17 90.9 103 45.6
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 8.3e-17 90.5 105 41.9
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 8.3e-17 90.5 107 42.1
MD05G1070500 Malus domestica HOM05D001848 ORTHO05D001295 1.1e-16 90.1 109 47.7
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 1.4e-16 89.7 109 43.1
Potri.009G112553 Populus trichocarpa HOM05D001848 ORTHO05D001295 3.2e-16 88.6 109 45.0
VMungo1127G0744 Vigna mungo HOM05D001848 ORTHO05D001295 3.2e-16 88.6 106 43.4
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 4.1e-16 88.2 109 42.2
TPR.G28058 Trifolium pratense HOM05D001848 ORTHO05D001295 4.1e-16 88.2 106 42.5
Psat7g184920 Pisum sativum HOM05D001848 ORTHO05D001295 5.4e-16 87.8 109 40.4
ATR0686G231 Amborella trichopoda HOM05D001848 ORTHO05D001295 7.1e-16 87.4 82 46.3
Lsat_1_v5_gn_5_118320 Lactuca sativa HOM05D001848 ORTHO05D001295 7.1e-16 87.4 106 38.7
Medtr4g069170 Medicago truncatula HOM05D001848 ORTHO05D001295 1.2e-15 86.7 107 43.0
FAN20G2845 Fragaria x ananassa HOM05D041998 ORTHO05D001295 2.1e-15 85.9 90 51.1
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.7e-15 85.5 105 41.0
Phvul.011G047400 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 4.6e-15 84.7 109 42.2
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 4.6e-15 84.7 101 48.5
ATR0686G063 Amborella trichopoda HOM05D001848 ORTHO05D001295 1.3e-14 83.2 82 43.9
Haze_02416 Corylus avellana HOM05D001848 ORTHO05D001295 1.7e-14 82.8 70 60.0
Migut.D00947 Erythranthe guttata HOM05D001848 ORTHO05D001295 1.7e-14 82.8 107 46.7
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.7e-14 82.8 106 41.5
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.7e-14 82.8 99 43.4
Medtr4g069200 Medicago truncatula HOM05D001848 ORTHO05D001295 2.3e-14 82.4 108 42.6
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 3.0e-14 82.0 106 38.7
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 3.0e-14 82.0 101 45.5
Oeu014325.1 Olea europaea HOM05D001848 ORTHO05D001295 5.1e-14 81.3 106 41.5
TPR.G28530 Trifolium pratense HOM05D001848 ORTHO05D001295 5.1e-14 81.3 108 42.6
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 6.6e-14 80.9 104 42.3
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 8.6e-14 80.5 106 40.6
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 8.6e-14 80.5 107 42.1
CiPaw.14G043500 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.1e-13 80.1 107 45.8
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 1.5e-13 79.7 108 38.9
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 1.5e-13 79.7 95 42.1
Lj1g0024594 Lotus japonicus HOM05D001848 ORTHO05D001295 1.9e-13 79.3 106 40.6
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 1.9e-13 79.3 106 39.6
SGA_v2.0_scaffold29G12067 Striga asiatica HOM05D001848 ORTHO05D001295 1.9e-13 79.3 102 45.1
HPP92_013640 Vanilla planifolia HOM05D001848 ORTHO05D001295 1.9e-13 79.3 99 43.4
Sc17g0001730 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.5e-13 79.0 103 38.8
PGSC0003DMG400011323 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.5e-13 79.0 106 40.6
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 2.5e-13 79.0 105 40.0
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 3.3e-13 78.6 107 39.3
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 3.3e-13 78.6 107 39.3
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.3e-13 78.6 107 37.4
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.3e-13 78.6 109 45.0
ClCG07G016680 Citrullus lanatus HOM05D001848 ORTHO05D001295 5.6e-13 77.8 101 43.6
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 5.6e-13 77.8 101 38.6
Psat0s3819g0040 Pisum sativum HOM05D001848 ORTHO05D001295 5.6e-13 77.8 82 43.9
VMungo1383G1556 Vigna mungo HOM05D001848 ORTHO05D001295 5.6e-13 77.8 100 41.0
CAN.G129.19 Capsicum annuum HOM05D001848 ORTHO05D001295 7.3e-13 77.4 106 40.6
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 7.3e-13 77.4 95 41.1
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 7.3e-13 77.4 106 38.7
MELO3C012724.2 Cucumis melo HOM05D001848 ORTHO05D001295 9.5e-13 77.0 105 37.1
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.2e-12 76.6 81 43.2
Ca_07467_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.2e-12 76.6 100 38.0
Ciclev10017274m.g Citrus clementina HOM05D001848 ORTHO05D001295 1.2e-12 76.6 96 42.7
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 1.2e-12 76.6 100 38.0
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.6e-12 76.3 106 38.7
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 2.1e-12 75.9 103 39.8
CsaV3_7G026880 Cucumis sativus L. HOM05D001848 ORTHO05D001295 2.1e-12 75.9 82 41.5
Nitab4.5_0005076g0020 Nicotiana tabacum HOM05D001848 ORTHO05D001295 2.1e-12 75.9 92 42.4
Psat7g184880 Pisum sativum HOM05D001848 ORTHO05D001295 2.8e-12 75.5 105 36.2
Gohir.A10G139400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 3.6e-12 75.1 106 43.4
Gohir.D10G127500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 3.6e-12 75.1 106 43.4
Gorai.011G140600 Gossypium raimondii HOM05D001848 ORTHO05D001295 3.6e-12 75.1 106 43.4
Peaxi162Scf00534g00001 Petunia axillaris HOM05D001848 ORTHO05D001295 3.6e-12 75.1 74 47.3
Phvul.008G137100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 3.6e-12 75.1 106 39.6
TWI36G0223 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 3.6e-12 75.1 104 38.5
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 4.7e-12 74.7 77 46.8
arahy.Tifrunner.gnm1.ann1.E6CSJF Arachis hypogaea HOM05D001848 ORTHO05D001295 6.2e-12 74.3 100 44.0
Gohir.A10G139300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 8.1e-12 73.9 106 42.5
Gorai.011G140500 Gossypium raimondii HOM05D001848 ORTHO05D001295 8.1e-12 73.9 106 41.5
Sed0003974 Sechium edule HOM05D001848 ORTHO05D001295 8.1e-12 73.9 80 43.8
PSO017G5175 Papaver somniferum HOM05D001848 ORTHO05D001295 1.1e-11 73.6 94 34.0
arahy.Tifrunner.gnm1.ann1.PJ92NG Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-11 73.2 100 43.0
MSTRG.27708 Avicennia marina HOM05D001848 ORTHO05D001295 1.4e-11 73.2 102 43.1
FvH4_2g17830 Fragaria vesca HOM05D001848 ORTHO05D001295 1.4e-11 73.2 99 38.4
FAN15G3178 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.4e-11 73.2 99 38.4
FAN24G1271 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.4e-11 73.2 99 38.4
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 1.4e-11 73.2 74 45.9
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 1.8e-11 72.8 102 39.2
SalBow3G1514 Salvia bowleyana HOM05D001848 ORTHO05D001295 1.8e-11 72.8 108 35.2
MD05G1159700 Malus domestica HOM05D001848 ORTHO05D001295 3.1e-11 72.0 106 39.6
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 4.0e-11 71.6 83 41.0
Manes.12G054000 Manihot esculenta HOM05D001848 ORTHO05D001295 4.0e-11 71.6 77 46.8
Thecc.04G175600 Theobroma cacao HOM05D001848 ORTHO05D001295 4.0e-11 71.6 101 39.6
Manes.13G054400 Manihot esculenta HOM05D001848 ORTHO05D001295 5.2e-11 71.2 77 45.5
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 5.2e-11 71.2 105 37.1
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 6.8e-11 70.9 101 36.6
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 6.8e-11 70.9 108 39.8
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 8.9e-11 70.5 95 38.9
ATR0686G030 Amborella trichopoda HOM05D001848 ORTHO05D001295 1.2e-10 70.1 67 44.8
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 1.2e-10 70.1 101 38.6
Cfa010570 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.2e-10 70.1 100 39.0
Os07g0287400 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 1.2e-10 70.1 77 40.3
Sopen03g040720 Solanum pennellii HOM05D001848 ORTHO05D001295 1.2e-10 70.1 83 39.8
Migut.D00734 Erythranthe guttata HOM05D001848 ORTHO05D001295 2.0e-10 69.3 101 39.6
HanXRQChr05g0141121 Helianthus annuus HOM05D001848 ORTHO05D001295 2.0e-10 69.3 88 39.8
Gorai.N003400 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.6e-10 68.9 100 40.0
THA.LOC104820118 Tarenaya hassleriana HOM05D001848 ORTHO05D001295 2.6e-10 68.9 102 34.3
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 3.4e-10 68.6 100 41.0
Sc17g0001740 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.4e-10 68.6 106 34.0
Eucgr.H00727 Eucalyptus grandis HOM05D001848 ORTHO05D001295 4.4e-10 68.2 91 41.8
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 4.4e-10 68.2 106 34.9
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 5.8e-10 67.8 77 40.3
MSTRG.5391 Avicennia marina HOM05D019352 ORTHO05D023805 5.8e-10 67.8 108 37.0
FAN24G2491 Fragaria x ananassa HOM05D001848 ORTHO05D001295 5.8e-10 67.8 100 39.0
Sp3g16940 Schrenkiella parvula HOM05D012125 ORTHO05D001295 5.8e-10 67.8 104 39.4
TAR362G0452 Trochodendron aralioides HOM05D001848 ORTHO05D001295 7.6e-10 67.4 106 36.8
Actinidia00500 Actinidia chinensis HOM05D001848 ORTHO05D001295 9.9e-10 67.0 107 37.4
Glyma.18G152400 Glycine max HOM05D001848 ORTHO05D001295 9.9e-10 67.0 91 38.5
Gohir.D11G148700 Gossypium hirsutum HOM05D001848 ORTHO05D001295 9.9e-10 67.0 100 36.0
Gorai.007G159400 Gossypium raimondii HOM05D001848 ORTHO05D001295 9.9e-10 67.0 100 36.0
Oeu007571.1 Olea europaea HOM05D001848 ORTHO05D001295 9.9e-10 67.0 107 42.1
Gohir.A11G142400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.3e-09 66.6 100 36.0
RcHm_v2.0_Chr6g0282851 Rosa chinensis HOM05D001848 ORTHO05D001295 1.3e-09 66.6 99 37.4
ATR0686G193 Amborella trichopoda HOM05D001848 ORTHO05D001295 1.7e-09 66.2 77 37.7
FvH4_2g17820 Fragaria vesca HOM05D001848 ORTHO05D001295 1.7e-09 66.2 100 38.0
FAN15G2800 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.7e-09 66.2 100 38.0
arahy.Tifrunner.gnm1.ann1.545QT9 Arachis hypogaea HOM05D001848 ORTHO05D001295 2.2e-09 65.9 78 46.2
Gohir.A07G159300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.2e-09 65.9 99 39.4
Gohir.D07G167100 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.9e-09 65.5 93 40.9
Os07g0290200 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 2.9e-09 65.5 101 36.6
RcHm_v2.0_Chr6g0282861 Rosa chinensis HOM05D001848 ORTHO05D001295 2.9e-09 65.5 99 37.4
Atru.chr6.3548 Acer truncatum HOM05D001848 ORTHO05D001295 3.8e-09 65.1 70 44.3
CARHR094290 Cardamine hirsuta HOM05D012125 ORTHO05D001295 3.8e-09 65.1 109 36.7
Potri.002G251000 Populus trichocarpa HOM05D001848 ORTHO05D001295 3.8e-09 65.1 93 39.8
SalBow7G0169 Salvia bowleyana HOM05D001848 ORTHO05D001295 3.8e-09 65.1 67 46.3
ATR0712G087 Amborella trichopoda HOM05D001848 ORTHO05D001295 4.9e-09 64.7 80 35.0
arahy.Tifrunner.gnm1.ann1.8S64Z0 Arachis hypogaea HOM05D001848 ORTHO05D001295 6.4e-09 64.3 96 39.6
Duzib151G0216 Durio zibethinus HOM05D001848 ORTHO05D001295 6.4e-09 64.3 102 41.2
Sabra02G0190900 Salix brachista HOM05D001848 ORTHO05D001295 8.4e-09 63.9 94 41.5
Migut.N01225 Erythranthe guttata HOM05D001848 ORTHO05D001295 1.4e-08 63.2 100 38.0
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.4e-08 63.2 99 34.3
Sp2g18860 Schrenkiella parvula HOM05D001848 ORTHO05D001295 1.9e-08 62.8 77 40.3
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 2.4e-08 62.4 77 39.0
Migut.I01055 Erythranthe guttata HOM05D001848 ORTHO05D001295 3.2e-08 62.0 104 40.4
Thhalv10005129m.g Eutrema salsugineum HOM05D001848 ORTHO05D001295 3.2e-08 62.0 98 35.7
Carub.0008s0807 Capsella rubella HOM05D001848 ORTHO05D001295 4.1e-08 61.6 76 35.5
AL8G21350 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 5.4e-08 61.2 100 33.0
MBI07_g13964_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 7.1e-08 60.8 109 36.7
Thhalv10021820m.g Eutrema salsugineum HOM05D012125 ORTHO05D001295 9.2e-08 60.5 103 37.9
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 9.2e-08 60.5 102 33.3
CARHR183590 Cardamine hirsuta HOM05D001848 ORTHO05D001295 1.2e-07 60.1 100 33.0
ClCG09G008160 Citrullus lanatus HOM05D001848 ORTHO05D001295 1.6e-07 59.7 90 34.4
AUR62028709 Chenopodium quinoa HOM05D001848 ORTHO05D001295 3.5e-07 58.5 74 37.8
FAN27G0651 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.5e-07 58.5 92 37.0
FAN27G2206 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.5e-07 58.5 92 37.0
BcaC01g03671 Brassica carinata HOM05D012125 ORTHO05D001295 1.0e-06 57.0 104 35.6
BolC3t17276H Brassica oleracea HOM05D012125 ORTHO05D001295 1.0e-06 57.0 104 35.6
PSO832G2089 Papaver somniferum HOM05D001848 ORTHO05D001295 1.0e-06 57.0 97 30.9
PSO210G3247 Papaver somniferum HOM05D001848 ORTHO05D001295 3.0e-06 55.5 91 31.9
C03p49810 Brassica napus HOM05D012125 ORTHO05D001295 5.1e-06 54.7 104 34.6


User provided reference genes

Program Settings