Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 0.0e+00 1464.9 864 100.0
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 2.2e-285 985.7 882 70.5
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.0e-243 844.3 889 61.6
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.8e-227 792.7 887 60.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.3e-220 768.8 876 60.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.6e-214 750.4 945 56.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.5e-145 520.0 874 46.1
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.6e-142 510.0 875 46.1
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.0e-141 508.4 875 45.8
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 6.8e-141 505.8 929 46.1
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 9.2e-138 495.4 939 41.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 2.0e-137 494.2 939 41.6
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.2e-126 458.4 954 41.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.1e-117 428.7 948 39.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 3.5e-113 413.7 960 40.1
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.0e-112 412.1 983 38.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.9e-111 407.9 894 38.5
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.4e-109 401.7 942 36.7
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.8e-108 396.4 887 37.9
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 2.9e-107 394.0 350 67.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 7.1e-106 389.4 906 38.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.7e-105 387.5 981 36.8
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 6.0e-105 386.3 878 40.7
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.4e-101 374.4 946 36.2
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 4.0e-101 373.6 922 39.2
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 4.4e-100 370.2 887 36.5
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.1e-97 361.3 918 38.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 4.6e-97 360.1 983 36.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 2.3e-96 357.8 887 38.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.1e-95 355.5 966 36.2
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.0e-92 344.7 925 36.8
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.0e-88 332.4 1028 35.4
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.3e-88 332.0 891 36.9
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.1e-87 328.9 923 33.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 9.6e-87 325.9 921 36.3
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.0e-85 320.5 900 35.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 2.0e-84 318.2 980 34.9
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 4.5e-84 317.0 910 35.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.7e-83 315.1 916 34.3
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 8.4e-83 312.8 955 33.9
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.0e-81 306.6 960 35.7
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 6.7e-80 303.1 964 35.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 7.4e-79 299.7 916 34.7
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.3e-78 298.9 966 32.8
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.6e-78 298.5 955 35.0
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.1e-78 298.1 872 35.6
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.8e-78 297.0 950 33.5
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.2e-78 296.6 917 34.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 8.2e-78 296.2 937 36.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.4e-77 295.4 954 33.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.8e-77 295.0 887 35.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.0e-77 293.9 959 33.4
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.9e-77 293.1 984 33.3
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.4e-76 290.8 911 34.0
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 4.5e-76 290.4 926 35.2
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.3e-75 288.9 937 34.3
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.7e-75 288.5 960 32.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.1e-74 285.8 897 33.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 7.9e-73 279.6 973 33.6
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 7.4e-71 273.1 973 33.2
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.3e-70 272.3 955 32.8
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 6.3e-70 270.0 907 33.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 3.1e-69 267.7 940 32.1
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.2e-68 265.8 897 33.9
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.6e-68 264.6 943 32.7
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 5.0e-67 260.4 983 31.7
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.1e-66 259.2 918 31.7
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.9e-66 258.5 1067 30.1
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.6e-65 254.2 937 32.7
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.9e-64 250.8 925 31.9
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.5e-63 248.8 904 31.1
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.4e-61 242.3 949 32.1
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.1e-61 241.1 917 29.7
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.1e-61 240.7 941 32.8
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.6e-57 227.6 934 30.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.6e-57 227.6 971 31.4
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.8e-54 218.0 961 29.4
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.8e-53 215.3 1052 28.4
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 4.1e-53 214.2 945 29.4
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 5.3e-53 213.8 965 30.1
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 9.1e-53 213.0 992 29.1
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.3e-51 209.1 894 31.3
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 5.0e-51 207.2 967 32.3
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.9e-50 205.3 943 29.3
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.2e-50 204.5 892 29.9
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 9.4e-50 203.0 892 29.9
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.2e-49 202.6 896 30.7
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.6e-49 202.2 896 30.6
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 2.7e-49 201.4 895 30.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 8.0e-49 199.9 885 31.1
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-48 198.7 897 30.4
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.3e-48 198.4 900 30.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.0e-48 198.0 365 41.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 6.7e-48 196.8 892 30.2
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 5.7e-47 193.7 966 30.2
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.2e-46 191.8 924 30.4
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.3e-46 190.3 924 29.7
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 6.3e-46 190.3 983 27.4
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 8.2e-46 189.9 965 29.8
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.8e-45 188.7 999 29.0
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.9e-44 183.7 960 28.5
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.2e-43 181.8 948 27.6
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.5e-43 179.9 978 29.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.8e-40 172.2 1002 28.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 3.0e-40 171.4 541 31.6
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.2e-38 165.2 145 64.1
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.4e-37 161.8 868 27.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.9e-35 154.8 965 29.1
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.1e-34 152.9 954 29.1
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 3.6e-33 147.9 185 56.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.4e-32 146.0 969 27.6
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.0e-32 144.8 876 29.2
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.5e-31 142.5 862 26.9
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 3.4e-31 141.4 855 28.1
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.4e-29 134.0 950 24.9
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.2e-28 132.9 899 29.8
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 2.3e-24 118.6 350 33.4
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.3e-22 112.8 815 25.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-20 105.9 346 30.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 5.9e-20 104.0 1036 26.0
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.6e-19 100.5 292 35.6
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 8.6e-19 100.1 80 70.0
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.3e-18 98.2 919 24.2
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 5.2e-16 90.9 122 54.9
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 6.8e-16 90.5 950 25.9
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 8.9e-16 90.1 623 26.8
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 3.4e-15 88.2 93 57.0
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.4e-15 88.2 199 43.2
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 9.8e-15 86.7 314 29.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.7e-14 85.9 133 44.4
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 2.9e-14 85.1 936 25.0
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-13 83.2 150 42.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.4e-13 82.0 104 54.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-12 79.7 103 46.6
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 3.5e-12 78.2 935 24.8
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 4.6e-12 77.8 102 52.0
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-11 76.6 112 43.8
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 1.3e-11 76.3 1044 25.9
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 3.0e-11 75.1 150 40.0
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 7.3e-10 70.5 78 60.3
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.2e-09 69.7 941 26.1
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.6e-09 68.2 84 54.8
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 1.1e-08 66.6 638 26.0
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.1e-08 65.1 135 39.3
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 6.8e-08 63.9 344 26.2
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 6.8e-08 63.9 805 23.6
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 1.5e-07 62.8 40 70.0
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.5e-07 62.8 166 38.6
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 2.6e-07 62.0 66 62.1
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 7.5e-07 60.5 225 31.1


User provided reference genes

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