Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.0e-90 336.7 162 100.0
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 3.6e-80 301.6 161 91.9
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.4e-79 299.7 153 94.1
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.0e-74 283.5 154 90.3
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 3.0e-74 282.0 154 89.6
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 8.7e-74 280.4 154 89.0
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.4e-71 273.1 161 83.2
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 3.8e-61 238.4 145 79.3
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 4.2e-60 235.0 154 72.1
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 7.1e-60 234.2 154 73.4
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.2e-59 233.4 156 75.0
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 2.1e-59 232.6 160 70.6
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 6.0e-59 231.1 155 71.6
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 2.3e-58 229.2 151 73.5
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 3.0e-58 228.8 150 72.7
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 3.9e-58 228.4 146 73.3
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 3.9e-58 228.4 156 72.4
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 3.9e-58 228.4 159 69.8
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 5.1e-58 228.0 156 70.5
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 5.1e-58 228.0 158 70.3
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 8.7e-58 227.3 161 70.2
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.5e-57 226.5 145 73.1
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.5e-57 226.5 145 73.1
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.9e-57 226.1 159 69.2
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 2.5e-57 225.7 159 69.8
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 2.5e-57 225.7 145 73.8
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.3e-57 225.3 159 68.6
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.3e-57 224.9 159 69.2
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.3e-57 224.9 159 68.6
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 1.3e-56 223.4 145 72.4
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.6e-56 223.0 145 71.7
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.6e-56 223.0 145 71.7
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.6e-56 223.0 145 71.7
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.6e-56 223.0 145 71.7
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 2.1e-56 222.6 152 70.4
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 2.1e-56 222.6 157 69.4
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 2.1e-56 222.6 145 72.4
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 3.7e-56 221.9 146 72.6
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 3.7e-56 221.9 152 68.4
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 1.1e-55 220.3 146 72.6
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 2.4e-55 219.2 156 70.5
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 4.1e-55 218.4 142 70.4
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 4.1e-55 218.4 160 66.9
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 5.3e-55 218.0 150 72.0
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 6.9e-55 217.6 144 69.4
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.2e-54 216.9 156 67.3
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.0e-54 216.1 144 70.1
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.0e-54 216.1 158 64.6
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.0e-54 216.1 144 70.8
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 2.6e-54 215.7 151 71.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.6e-54 215.7 144 71.5
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 2.6e-54 215.7 148 70.3
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 4.5e-54 214.9 158 69.6
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 7.6e-54 214.2 148 68.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.0e-53 213.8 147 67.3
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 1.0e-53 213.8 145 69.0
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 1.3e-53 213.4 150 71.3
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.2e-53 212.6 147 68.7
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 3.8e-53 211.8 146 67.8
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.5e-53 211.1 150 68.0
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.4e-52 209.9 142 69.7
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 5.5e-52 208.0 153 65.4
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 5.5e-52 208.0 139 66.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 9.3e-52 207.2 152 63.8
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.6e-51 206.5 133 74.4
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.6e-51 206.5 144 67.4
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.0e-50 203.8 149 65.8
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.0e-50 203.8 155 63.9
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.0e-50 203.8 142 67.6
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 1.3e-50 203.4 160 61.9
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 2.3e-50 202.6 144 70.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 3.9e-50 201.8 162 63.0
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 5.1e-50 201.4 137 65.7
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 6.7e-50 201.1 147 63.3
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 6.7e-50 201.1 147 68.0
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.5e-49 199.1 148 66.9
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 5.7e-49 198.0 149 63.1
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 7.4e-49 197.6 144 66.0
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.1e-47 193.7 146 65.1
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 6.9e-47 191.0 139 68.3
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.2e-46 190.3 139 62.6
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 1.2e-46 190.3 143 66.4
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 1.5e-46 189.9 144 66.0
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 2.0e-46 189.5 141 62.4
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 5.0e-45 184.9 149 61.7
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 6.5e-45 184.5 149 61.7
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.9e-44 183.0 156 61.5
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 7.9e-43 177.6 139 59.0
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 2.8e-40 169.1 140 56.4
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.8e-39 166.4 147 54.4
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 4.1e-39 165.2 156 56.4
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 5.9e-38 161.4 134 53.0
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 8.5e-37 157.5 107 69.2
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 3.2e-36 155.6 152 53.9
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.0e-34 150.6 133 53.4
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 3.0e-34 149.1 134 53.7
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 4.4e-33 145.2 153 48.4
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 7.4e-33 144.4 133 51.9
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 6.3e-32 141.4 148 50.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 4.5e-30 135.2 152 48.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.9e-28 129.8 99 65.7
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.5e-28 129.4 99 65.7
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 9.4e-28 127.5 107 59.8
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 6.7e-26 121.3 150 44.0
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.1e-25 120.6 139 48.9
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 1.1e-25 120.6 97 60.8
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 3.2e-20 102.4 111 46.8
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.3e-18 96.3 103 47.6
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 5.2e-18 95.1 158 36.7
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 8.8e-18 94.4 83 57.8
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.4e-15 87.0 155 34.8
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 9.1e-15 84.3 75 57.3


User provided reference genes

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