Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 4.0e-162 574.7 290 100.0
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 6.2e-139 497.7 289 86.5
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 5.8e-137 491.1 289 85.5
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 7.3e-132 474.2 291 83.2
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.4e-122 442.6 289 78.5
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.5e-121 439.9 293 76.8
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 7.6e-121 437.6 289 76.5
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.2e-119 432.2 285 77.2
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.1e-115 419.5 281 74.0
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 8.1e-115 417.5 286 73.8
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.1e-114 417.2 289 73.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 3.1e-114 415.6 291 72.5
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 4.0e-114 415.2 289 73.4
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 5.3e-114 414.8 294 70.4
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 5.3e-114 414.8 287 72.5
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 1.5e-113 413.3 296 70.9
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.5e-113 413.3 285 74.7
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.0e-112 410.6 291 71.8
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 1.4e-111 406.8 305 68.9
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 9.3e-111 404.1 286 71.7
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.6e-110 403.3 287 72.5
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 7.9e-110 401.0 284 71.5
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.5e-108 396.7 285 71.9
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.3e-108 395.2 289 70.2
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 4.3e-108 395.2 285 69.1
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.3e-107 393.7 293 69.3
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 2.8e-107 392.5 285 68.8
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 1.8e-106 389.8 286 68.5
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 3.1e-106 389.0 293 66.6
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 6.9e-106 387.9 286 69.2
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.2e-105 387.1 328 61.0
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 1.5e-105 386.7 291 68.0
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 2.6e-105 386.0 286 68.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 3.4e-105 385.6 252 73.8
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 5.9e-105 384.8 293 66.6
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 5.9e-105 384.8 293 66.6
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 5.9e-105 384.8 286 68.9
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 7.6e-105 384.4 293 65.5
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.0e-104 384.0 289 68.5
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 2.2e-104 382.9 295 67.5
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 5.0e-104 381.7 286 67.5
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 5.0e-104 381.7 309 66.3
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 6.5e-104 381.3 289 68.5
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.1e-103 380.6 296 66.2
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.1e-103 380.6 290 66.9
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.4e-103 380.2 261 71.6
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.4e-103 380.2 279 68.8
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 5.5e-103 378.3 282 68.4
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 5.5e-103 378.3 273 69.2
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 9.3e-103 377.5 281 68.3
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.6e-102 376.7 302 64.2
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 2.1e-102 376.3 263 71.5
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 2.7e-102 375.9 251 70.9
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.7e-102 375.9 259 73.0
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 4.6e-102 375.2 289 67.1
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 6.7e-101 371.3 293 64.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.9e-100 369.8 309 61.5
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.5e-100 369.4 303 63.7
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.5e-100 369.4 281 67.3
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 3.3e-100 369.0 286 66.4
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 5.7e-100 368.2 258 70.2
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 7.4e-100 367.9 303 63.4
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 2.2e-99 366.3 305 63.3
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 2.2e-99 366.3 316 60.1
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 4.8e-99 365.2 296 63.9
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.8e-99 365.2 229 77.3
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.8e-98 363.2 232 75.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.4e-98 362.8 257 71.6
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 4.1e-98 362.1 231 74.9
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 5.3e-98 361.7 250 71.2
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.0e-96 357.5 230 74.8
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.3e-96 357.1 257 68.9
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 5.0e-96 355.1 273 65.2
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 3.2e-95 352.4 285 62.5
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 4.6e-94 348.6 280 66.1
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 6.1e-94 348.2 230 71.3
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 5.1e-93 345.1 230 72.2
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 8.8e-93 344.4 228 73.2
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.1e-92 344.0 230 71.7
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 4.2e-87 325.5 248 63.7
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 4.2e-87 325.5 255 64.7
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 1.2e-86 323.9 217 71.9
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 4.7e-86 322.0 203 76.8
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 6.1e-86 321.6 248 63.3
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.8e-82 310.1 217 72.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 3.1e-82 309.3 240 65.8
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.2e-78 297.4 205 69.8
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.3e-77 293.1 205 72.2
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 5.2e-77 292.0 205 71.7
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 2.6e-76 289.7 245 57.6
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.3e-76 289.3 264 59.1
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.6e-70 270.4 285 53.3
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 3.0e-69 266.2 183 72.7
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 1.5e-68 263.8 254 53.1
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.6e-68 263.1 183 68.9
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 9.8e-68 261.2 288 47.2
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 4.8e-67 258.8 219 63.9
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.9e-63 246.9 165 72.7
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 8.0e-62 241.5 245 50.6
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 6.8e-61 238.4 211 61.6
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 4.4e-60 235.7 266 47.0
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 7.8e-57 224.9 280 47.1
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.7e-51 207.2 290 47.9
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 6.2e-46 188.7 130 71.5
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.4e-37 161.0 111 72.1
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.6e-30 137.5 170 45.3
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.8e-27 126.3 99 63.6
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.2e-25 121.3 99 58.6
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 7.3e-23 112.1 340 28.2
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 2.8e-22 110.2 289 31.1
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 8.9e-21 105.1 246 32.9
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.9e-18 97.4 102 53.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.0e-13 79.7 49 75.5
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 2.0e-12 77.4 106 44.3
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 2.7e-09 67.0 60 51.7
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 4.6e-09 66.2 60 50.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 4.6e-09 66.2 60 50.0
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 6.0e-09 65.9 52 55.8
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.0e-08 65.1 34 79.4
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 6.7e-08 62.4 57 61.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.3e-06 58.2 37 64.9


User provided reference genes

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