Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 6.7e-25 116.7 65 100.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.8e-23 110.5 63 96.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.9e-22 106.7 63 92.1
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 6.9e-22 106.7 63 92.1
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-21 105.9 63 92.1
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.5e-21 105.5 63 92.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.0e-21 105.1 63 90.5
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.4e-21 104.4 63 87.3
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.8e-21 103.6 63 88.9
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 7.6e-21 103.2 63 92.1
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.6e-21 103.2 63 90.5
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.0e-20 102.8 63 90.5
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.0e-20 102.8 64 93.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.0e-20 102.8 64 92.2
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.3e-20 102.4 63 90.5
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.7e-20 102.1 63 90.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.2e-20 101.7 63 92.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 2.9e-20 101.3 65 86.2
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.8e-20 100.9 63 88.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.9e-20 100.5 63 85.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.5e-20 100.1 63 88.9
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.5e-20 100.1 63 88.9
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.5e-20 100.1 63 88.9
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.4e-20 99.8 63 92.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.4e-20 99.8 64 90.6
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 8.4e-20 99.8 65 84.6
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.1e-19 99.4 64 89.1
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 86.4
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.1e-19 99.4 64 89.1
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.1e-19 99.4 60 90.0
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.4e-19 99.0 62 91.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.4e-19 99.0 64 90.6
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.4e-19 99.0 64 89.1
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.4e-19 99.0 63 87.3
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.9e-19 98.6 65 86.2
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.9e-19 98.6 64 87.5
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.9e-19 98.6 63 85.7
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.5e-19 98.2 60 86.7
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.2e-19 97.8 64 89.1
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.2e-19 97.8 65 87.7
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.2e-19 97.8 62 91.9
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.2e-19 97.8 64 89.1
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.2e-19 97.8 64 89.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.2e-19 97.4 65 87.7
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.2e-19 97.4 65 87.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.2e-19 97.4 63 84.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.1e-19 96.7 66 84.8
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.1e-19 96.7 65 86.2
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 87.9
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.2e-18 95.9 60 90.0
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 63 82.5
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 84.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.1e-18 95.1 63 81.0
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 2.1e-18 95.1 63 81.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 2.1e-18 95.1 63 81.0
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.5e-18 94.4 61 85.2
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 3.5e-18 94.4 61 85.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.6e-18 94.0 60 86.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.0e-18 93.6 69 78.3
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.0e-18 93.6 69 78.3
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.3e-17 92.4 65 81.5
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.3e-17 92.4 65 81.5
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 3.0e-17 91.3 65 84.6
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 5.1e-17 90.5 59 84.7
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.1e-16 89.4 65 75.4
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.1e-16 89.4 66 75.8
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 77.3
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.5e-16 89.0 65 75.4
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.5e-16 88.2 64 81.2
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 5.7e-16 87.0 64 78.1
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 68 76.5
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.8e-15 84.7 68 72.1
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 6.3e-15 83.6 59 81.4
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 8.2e-15 83.2 65 70.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 8.2e-15 83.2 59 81.4
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.1e-14 82.8 65 70.8
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.4e-14 82.4 67 74.6
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 5.3e-14 80.5 58 81.0
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 6.9e-14 80.1 65 69.2
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.2e-13 79.3 64 70.3
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.2e-13 79.3 68 70.6
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.5e-13 79.0 75 70.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.0e-13 78.6 55 83.6
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.5e-13 77.4 65 67.7
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 5.9e-13 77.0 62 74.2
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.9e-13 77.0 52 84.6
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-12 75.5 60 66.7
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-12 75.5 60 66.7
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 1.7e-12 75.5 65 67.7
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.9e-12 74.7 61 68.9
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.9e-12 74.7 61 68.9
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 3.8e-12 74.3 64 68.8
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 3.8e-12 74.3 64 68.8
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 68.8
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 68.8
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 68.8
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.3e-11 69.7 44 88.6
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.6e-10 68.9 62 69.4
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 7.9e-10 66.6 61 63.9
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 7.9e-10 66.6 58 62.1
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.3e-09 65.9 76 57.9
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 5.1e-09 63.9 59 61.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 6.7e-09 63.5 58 62.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.5e-08 62.4 60 58.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.5e-08 61.6 58 63.8
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-08 61.2 58 58.6
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-08 61.2 58 58.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 3.3e-08 61.2 58 62.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.3e-08 61.2 58 60.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.3e-08 61.2 58 62.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 63.8
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.4e-08 60.1 58 60.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 9.7e-08 59.7 52 65.4
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 9.7e-08 59.7 64 57.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 9.7e-08 59.7 58 60.3
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.7e-08 59.7 58 60.3
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.7e-08 59.7 54 64.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-07 59.3 62 58.1
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.6e-07 58.9 62 56.5
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.2e-07 58.5 61 62.3
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 4.8e-07 57.4 58 56.9
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.3e-07 57.0 61 54.1
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.3e-07 57.0 54 61.1
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 8.2e-07 56.6 59 55.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.2e-07 56.6 58 58.6
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.2e-07 56.6 58 58.6
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 57.4
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 60.0
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-06 55.5 52 61.5
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.4e-06 55.1 72 50.0
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.4e-06 55.1 58 58.6
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 54.4
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 54.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 54.4
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 5.3e-06 53.9 58 56.9
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.3e-06 53.9 58 56.9
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 6.9e-06 53.5 57 56.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.9e-06 53.5 57 56.1
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.9e-06 53.5 55 60.0
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 9.0e-06 53.1 58 55.2
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 9.0e-06 53.1 56 57.1


User provided reference genes

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