Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 0.0e+00 1412.9 807 100.0
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.3e-298 1029.6 805 76.3
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.6e-293 1012.7 869 70.4
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.6e-290 1002.7 794 76.1
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.7e-290 1001.5 806 75.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.0e-284 983.4 814 74.7
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 3.6e-205 719.2 837 60.5
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 7.1e-201 704.9 928 50.6
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 7.1e-201 704.9 927 53.1
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.1e-198 697.6 860 58.0
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 5.8e-195 685.3 881 55.8
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.5e-190 670.6 882 55.2
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 4.8e-189 665.6 820 53.4
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 9.0e-188 661.4 867 54.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.0e-183 646.4 815 55.8
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 3.9e-183 646.0 861 56.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.1e-176 623.6 820 54.8
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 6.1e-176 622.1 851 55.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.8e-173 613.2 867 49.0
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.2e-169 599.7 874 53.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.2e-168 597.8 874 53.1
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.7e-165 587.4 849 54.5
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.7e-165 587.4 783 53.3
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 6.3e-165 585.5 1012 47.9
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.3e-165 585.5 845 54.4
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 8.2e-165 585.1 844 54.9
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.9e-162 576.6 834 55.2
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.7e-157 560.8 893 50.3
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.1e-156 558.1 791 51.2
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 2.0e-155 553.9 797 51.3
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 3.5e-155 553.1 774 53.1
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.5e-155 552.7 778 51.3
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 9.4e-153 545.0 815 49.8
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 4.7e-152 542.7 779 54.3
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.3e-151 540.4 816 51.6
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.5e-150 537.7 831 50.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 6.3e-149 532.3 818 46.8
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 8.2e-149 531.9 812 50.2
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 5.3e-148 529.3 795 52.8
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.0e-147 527.3 947 43.9
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 3.8e-146 523.1 901 45.0
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 5.5e-145 519.2 836 48.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.6e-144 517.7 852 44.2
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 4.7e-144 516.2 848 46.9
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.4e-143 514.6 910 44.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.7e-141 507.7 833 46.6
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.8e-141 506.9 814 49.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 3.3e-137 493.4 869 47.2
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 2.8e-136 490.3 775 46.6
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.0e-134 484.2 861 45.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 7.5e-134 482.3 785 47.8
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 6.3e-133 479.2 870 45.5
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 8.3e-133 478.8 961 40.3
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 8.3e-133 478.8 762 46.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.0e-131 474.2 813 45.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 4.5e-131 473.0 865 46.6
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 6.6e-130 469.2 762 46.3
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.3e-129 466.8 861 46.5
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.1e-128 462.6 688 46.5
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.6e-126 457.2 885 41.9
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 9.8e-126 455.3 771 42.2
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 8.3e-125 452.2 758 45.8
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.2e-124 450.3 876 44.4
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.0e-122 445.3 811 44.3
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.9e-122 443.4 854 40.9
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 9.5e-121 438.7 784 48.5
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.2e-120 438.3 850 43.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 6.8e-119 432.6 710 48.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 2.2e-117 427.6 794 44.0
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.9e-117 426.4 456 57.9
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 4.9e-117 426.4 796 45.2
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 5.4e-116 422.9 812 42.4
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.1e-115 421.0 809 44.5
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.7e-115 420.6 804 42.3
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 3.5e-115 420.2 787 45.4
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 8.6e-114 415.6 767 46.0
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.5e-113 414.1 789 45.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 4.0e-111 406.8 780 40.6
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 6.8e-111 406.0 789 45.1
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.2e-110 405.2 803 44.2
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.7e-109 400.2 792 44.3
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.9e-109 399.8 789 44.5
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 8.3e-109 399.1 884 39.8
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.2e-107 395.2 789 44.4
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 6.0e-107 392.9 797 40.9
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.9e-106 390.2 401 60.3
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 8.9e-103 379.0 735 44.9
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.1e-99 367.9 804 40.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.4e-92 345.1 789 41.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.6e-91 341.7 750 41.3
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.7e-91 340.9 755 39.1
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 6.2e-88 329.7 831 39.2
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 4.8e-80 303.5 469 45.4
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 9.0e-79 299.3 815 38.2
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.2e-76 290.8 418 45.5
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.1e-58 230.3 538 48.3
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 6.7e-58 229.9 629 40.4
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 4.4e-49 200.7 136 80.1
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.8e-48 197.2 645 33.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.8e-48 197.2 645 33.0
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 7.7e-46 189.9 334 42.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-43 182.2 853 27.5
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.7e-40 172.2 161 64.0
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.7e-38 163.3 307 50.5
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 4.0e-34 151.0 379 37.5
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 2.2e-29 135.2 294 37.8
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 8.5e-29 133.3 132 57.6
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.0e-25 122.1 208 44.7
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 3.7e-24 117.9 169 49.1
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.5e-20 105.1 397 27.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.3e-20 104.8 242 36.0
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.4e-18 99.4 100 58.0
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 2.6e-17 95.1 102 51.0
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.7e-16 91.3 158 43.0
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.7e-11 74.3 111 42.3
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 6.1e-11 73.9 63 63.5
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 8.9e-10 70.1 39 87.2
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.3e-08 66.2 41 85.4
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 1.1e-07 63.2 56 57.1
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 2.0e-06 58.9 99 39.4


User provided reference genes

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