Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 2.6e-89 332.0 165 100.0
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 4.3e-68 261.5 133 97.0
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.3e-66 255.8 133 94.0
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.3e-66 255.8 133 94.0
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 2.3e-66 255.8 133 94.0
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 6.6e-61 237.7 133 86.5
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 6.6e-61 237.7 133 87.2
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 3.3e-60 235.3 133 86.5
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 4.3e-60 235.0 133 86.5
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 4.3e-60 235.0 134 85.8
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 4.3e-60 235.0 133 85.7
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 2.1e-59 232.6 133 85.7
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 3.6e-59 231.9 133 83.5
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 4.7e-59 231.5 133 85.0
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 6.2e-59 231.1 133 81.2
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 1.0e-58 230.3 133 83.5
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 1.8e-58 229.6 132 86.4
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 4.0e-58 228.4 133 83.5
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 4.0e-58 228.4 130 85.4
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 5.2e-58 228.0 131 84.0
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 5.2e-58 228.0 133 80.5
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 6.8e-58 227.6 133 81.2
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 8.9e-58 227.3 133 81.2
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 1.2e-57 226.9 133 79.7
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 1.5e-57 226.5 133 81.2
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 1.5e-57 226.5 131 83.2
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 1.5e-57 226.5 127 83.5
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 2.0e-57 226.1 133 80.5
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 3.4e-57 225.3 133 81.2
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 3.4e-57 225.3 133 82.7
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 3.4e-57 225.3 131 82.4
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 1.7e-56 223.0 133 81.2
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 2.2e-56 222.6 133 82.0
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 2.9e-56 222.2 133 80.5
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 3.7e-56 221.9 140 79.3
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 6.4e-56 221.1 133 81.2
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 1.4e-55 219.9 134 82.1
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 2.4e-55 219.2 139 80.6
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 4.1e-55 218.4 133 78.9
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 7.0e-55 217.6 133 78.2
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 1.2e-54 216.9 133 78.2
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 3.5e-54 215.3 133 77.4
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 6.0e-54 214.5 133 76.7
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 7.8e-54 214.2 133 75.9
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 1.0e-53 213.8 130 79.2
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 5.0e-53 211.5 133 76.7
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 1.1e-52 210.3 133 75.2
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 3.3e-52 208.8 113 88.5
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 5.6e-52 208.0 181 62.4
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 2.8e-51 205.7 133 72.9
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 2.8e-51 205.7 116 86.2
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 1.4e-50 203.4 128 78.1
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 1.4e-50 203.4 128 74.2
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 1.8e-50 203.0 133 72.9
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 3.1e-50 202.2 133 74.4
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 1.2e-49 200.3 133 71.4
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 1.2e-49 200.3 133 71.4
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 2.0e-49 199.5 114 80.7
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 2.0e-49 199.5 177 58.2
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 2.6e-49 199.1 133 72.2
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 2.6e-49 199.1 133 71.4
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 4.4e-49 198.4 133 71.4
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 9.8e-49 197.2 133 70.7
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 2.2e-48 196.1 113 82.3
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 1.1e-47 193.7 133 69.9
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 1.1e-47 193.7 133 69.9
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 9.2e-47 190.7 133 69.9
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 2.7e-46 189.1 133 69.2
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 3.5e-46 188.7 133 66.9
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 7.8e-46 187.6 157 66.9
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 8.6e-45 184.1 196 52.6
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 7.3e-44 181.0 138 63.8
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 2.1e-43 179.5 101 80.2
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 6.2e-43 177.9 105 79.0
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 8.9e-42 174.1 98 84.7
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 2.6e-41 172.6 105 78.1
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 9.9e-41 170.6 129 62.0
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 1.7e-40 169.9 105 77.1
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 1.7e-40 169.9 127 61.4
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 3.8e-40 168.7 96 81.2
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 6.4e-40 167.9 105 73.3
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 1.4e-39 166.8 98 80.6
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 2.4e-39 166.0 128 61.7
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 3.2e-39 165.6 99 77.8
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 1.6e-38 163.3 92 81.5
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 7.6e-33 144.4 133 62.4
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 3.2e-31 139.0 122 53.3
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 7.1e-31 137.9 133 58.6
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 5.6e-28 128.3 114 47.4
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 4.0e-26 122.1 70 84.3
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 9.9e-25 117.5 111 50.5
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 6.0e-22 108.2 111 49.5
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 1.3e-21 107.1 104 49.0
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 8.7e-21 104.4 111 47.7
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 5.6e-20 101.7 62 77.4
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.6e-19 100.1 67 71.6
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 6.9e-18 94.7 110 43.6
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 3.7e-11 72.4 68 52.9
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 1.8e-10 70.1 74 43.2
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 1.8e-10 70.1 47 59.6
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 9.0e-10 67.8 74 55.4
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 4.5e-09 65.5 89 40.4
unitig_747.g21224 Utricularia gibba HOM05D007407 ORTHO05D009298 4.9e-08 62.0 36 72.2
SEGI_10413 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 6.0e-06 55.1 34 58.8


User provided reference genes

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