Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 3.8e-41 171.0 84 100.0
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 9.8e-37 156.4 80 93.8
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 2.9e-36 154.8 81 91.4
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.7e-36 154.5 81 91.4
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 6.4e-36 153.7 80 92.5
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 3.2e-35 151.4 80 90.0
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 1.6e-34 149.1 82 84.1
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 4.6e-34 147.5 82 82.9
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 7.8e-34 146.7 80 85.0
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 1.7e-33 145.6 80 85.0
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 3.9e-33 144.4 82 81.7
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 3.9e-33 144.4 82 84.1
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 3.9e-33 144.4 80 83.8
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 5.0e-33 144.1 80 82.5
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 6.6e-33 143.7 82 84.1
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 8.6e-33 143.3 82 84.1
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 1.5e-32 142.5 82 78.0
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 4.3e-32 141.0 82 80.5
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 5.6e-32 140.6 80 78.8
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 7.3e-32 140.2 80 80.0
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 7.3e-32 140.2 82 80.5
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 7.3e-32 140.2 83 77.1
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 9.5e-32 139.8 81 79.0
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 1.6e-31 139.0 80 80.0
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 3.6e-31 137.9 80 78.8
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 3.6e-31 137.9 80 78.8
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 4.7e-31 137.5 80 80.0
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 6.2e-31 137.1 81 74.1
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 8.0e-31 136.7 80 77.5
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 1.1e-30 136.3 82 76.8
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 1.1e-30 136.3 82 76.8
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 1.1e-30 136.3 80 78.8
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 1.4e-30 136.0 80 78.8
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.8e-30 135.6 82 78.0
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 2.3e-30 135.2 82 78.0
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 1.2e-29 132.9 82 76.8
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.5e-29 132.5 82 75.6
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.5e-29 132.5 82 75.6
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 2.0e-29 132.1 82 75.6
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 2.0e-29 132.1 82 75.6
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.6e-29 131.7 82 76.8
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 2.6e-29 131.7 80 76.2
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 2.6e-29 131.7 80 76.2
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 5.8e-29 130.6 82 74.4
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 7.5e-29 130.2 80 76.2
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.5e-29 130.2 80 76.2
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.5e-29 130.2 80 76.2
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 9.8e-29 129.8 80 76.2
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 9.8e-29 129.8 82 74.4
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 75.0
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.3e-28 129.4 82 74.4
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 76.2
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.7e-28 129.0 80 77.5
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 1.7e-28 129.0 80 75.0
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.2e-28 128.6 80 73.8
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.2e-28 128.6 82 73.2
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 2.2e-28 128.6 80 71.2
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 2.2e-28 128.6 80 77.5
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 2.9e-28 128.3 80 72.5
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 75.0
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 4.9e-28 127.5 80 73.8
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 6.4e-28 127.1 80 77.5
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 6.4e-28 127.1 80 77.5
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 6.4e-28 127.1 80 77.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 6.4e-28 127.1 80 76.2
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 6.4e-28 127.1 82 72.0
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 76.2
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 76.2
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 1.4e-27 125.9 80 73.8
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.4e-27 125.9 81 71.6
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 76.2
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 72.5
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 71.2
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 76.2
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 75.0
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 3.2e-27 124.8 82 70.7
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 3.2e-27 124.8 81 74.1
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 70.0
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 5.4e-27 124.0 80 72.5
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 5.4e-27 124.0 80 73.8
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 73.8
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 73.8
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 73.8
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 71.2
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.6e-26 122.5 80 72.5
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 72.5
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 72.5
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 73.8
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 70.0
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.0e-26 122.1 80 68.8
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 4.6e-26 120.9 80 72.5
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 4.6e-26 120.9 80 72.5
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 5.0e-25 117.5 80 71.2
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 3.3e-24 114.8 81 71.6
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 5.6e-24 114.0 80 63.8
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 1.6e-23 112.5 69 75.4
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 5.2e-22 107.5 66 72.7
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 5.2e-22 107.5 80 65.0
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.3e-20 102.8 65 70.8
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 2.2e-20 102.1 77 67.5
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 2.9e-20 101.7 80 62.5
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.9e-19 99.0 57 82.5
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 1.7e-17 92.4 89 53.9
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 3.0e-17 91.7 79 59.5
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 1.9e-16 89.0 85 57.6
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 1.2e-15 86.3 105 45.7
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 1.2e-15 86.3 61 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.7e-15 84.3 80 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.4e-14 82.0 80 51.2
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 1.4e-11 72.8 51 66.7
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 1.6e-10 69.3 77 42.9
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 6.6e-09 63.9 40 77.5
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 8.7e-09 63.5 60 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 9.6e-08 60.1 58 50.0


User provided reference genes

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