Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 5.5e-256 887.1 437 100.0
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.6e-226 789.3 435 88.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 4.0e-222 774.6 437 87.2
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 9.7e-221 770.0 437 87.2
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 4.8e-220 767.7 459 83.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.1e-219 764.6 437 86.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.3e-219 764.2 437 86.0
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-218 762.7 434 85.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.5e-217 756.9 437 85.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.0e-206 721.8 437 82.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.0e-206 721.5 434 80.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.7e-205 717.6 431 79.6
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.7e-204 714.9 437 80.5
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.7e-204 714.9 432 79.6
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 6.3e-204 714.1 437 79.4
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.4e-203 713.0 432 79.4
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.1e-203 711.4 431 78.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 7.0e-203 710.7 437 79.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.6e-202 709.5 437 78.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-200 703.4 437 78.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-200 703.0 436 79.1
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.5e-200 703.0 435 78.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.5e-200 702.2 435 78.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-199 698.7 437 76.9
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.6e-199 698.4 434 77.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.0e-199 697.2 435 77.5
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-198 696.8 437 76.7
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.0e-198 696.8 434 77.6
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.4e-198 696.4 437 77.3
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 5.2e-198 694.5 436 77.3
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.8e-198 694.1 455 75.6
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.6e-197 692.2 435 76.3
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.6e-197 692.2 432 77.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.6e-197 692.2 435 77.7
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 4.4e-197 691.4 435 77.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.8e-197 691.0 432 76.9
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.8e-197 691.0 436 77.1
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 5.8e-197 691.0 432 78.2
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.5e-197 690.6 454 76.2
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.2e-196 689.1 435 75.9
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.2e-196 689.1 430 77.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.9e-196 688.7 432 77.1
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 8.3e-196 687.2 432 77.3
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.3e-196 687.2 437 76.2
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.1e-195 686.8 435 77.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.1e-195 686.8 432 77.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.9e-195 686.0 432 76.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.4e-195 684.5 435 76.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 7.0e-195 684.1 431 78.0
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 9.2e-195 683.7 432 75.9
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.0e-194 682.6 430 77.0
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.7e-194 682.2 432 77.3
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.5e-194 681.8 437 75.1
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.5e-194 681.8 435 77.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 4.6e-194 681.4 457 72.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.6e-194 681.4 437 75.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.0e-194 681.0 431 75.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 7.8e-194 680.6 432 75.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 7.8e-194 680.6 432 75.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.7e-193 679.5 432 75.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-193 679.5 431 77.3
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.7e-193 679.5 435 77.2
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.3e-193 679.1 437 75.5
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.3e-193 679.1 435 76.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.0e-193 678.7 434 77.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.0e-193 678.7 435 76.3
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 3.0e-193 678.7 435 76.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 3.9e-193 678.3 437 75.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 5.0e-193 677.9 432 74.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.0e-193 677.9 432 76.4
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 5.0e-193 677.9 435 77.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 6.6e-193 677.6 432 74.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.6e-193 677.6 432 75.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.9e-192 676.0 431 76.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.5e-192 675.6 432 75.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.3e-192 675.2 435 75.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.3e-192 675.2 448 75.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.3e-192 675.2 432 75.7
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.3e-192 675.2 437 75.1
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.3e-192 674.9 432 75.7
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.5e-192 673.7 437 74.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 9.5e-192 673.7 437 75.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.6e-191 672.9 435 75.4
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.1e-191 672.5 435 75.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.1e-191 672.5 435 75.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.1e-191 672.5 436 74.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.8e-191 672.2 432 75.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.2e-191 671.0 430 75.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.0e-191 670.6 429 74.6
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.1e-190 670.2 432 74.5
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-190 669.8 432 75.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.0e-190 668.3 433 75.3
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-189 666.0 470 70.2
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.6e-189 665.6 433 74.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.5e-189 664.1 435 74.5
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.5e-189 664.1 432 73.1
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.8e-189 663.7 432 75.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.3e-188 663.3 434 75.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.4e-187 659.8 431 74.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.4e-187 659.8 432 74.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.9e-187 659.4 432 75.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.4e-187 659.1 436 74.1
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.2e-187 658.7 432 73.4
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.2e-186 656.8 434 74.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.7e-186 655.6 432 73.6
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.6e-186 654.8 431 72.4
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.3e-185 652.5 437 73.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.5e-184 649.0 429 73.4
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 4.3e-184 648.3 426 75.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.2e-183 646.7 424 73.3
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 9.9e-181 637.1 434 70.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.9e-180 635.6 428 72.2
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 2.9e-180 635.6 514 63.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.4e-180 634.4 437 72.1
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-179 633.6 431 71.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 2.4e-179 632.5 435 72.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-178 629.8 438 70.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.5e-176 622.5 428 71.3
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.3e-176 621.7 380 79.2
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.6e-176 621.3 432 69.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 9.5e-176 620.5 436 69.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.6e-175 619.8 436 70.4
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.1e-174 617.1 437 68.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.4e-174 616.7 437 70.9
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.4e-174 616.7 437 70.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.5e-173 613.2 433 68.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 9.2e-171 604.0 377 76.7
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.5e-170 602.1 428 68.5
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.6e-170 601.7 387 74.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 7.3e-168 594.3 437 65.4
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.6e-167 593.2 428 67.3
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.4e-166 589.3 380 74.7
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-164 582.4 357 78.2
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 8.4e-164 580.9 432 67.6
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-160 570.1 357 76.5
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 4.2e-155 552.0 430 62.1
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-152 543.9 454 63.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 5.7e-144 515.0 430 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 6.2e-143 511.5 427 58.1
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 6.2e-143 511.5 428 57.5
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.0e-141 506.5 428 59.6
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.4e-133 479.2 362 66.3
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.9e-132 476.1 318 73.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.6e-130 470.3 443 53.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-126 456.8 332 69.3
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 4.8e-119 432.2 319 70.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.6e-106 390.6 308 64.9
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 6.1e-106 388.7 240 77.9
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-103 380.9 249 73.9
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.2e-100 370.2 417 45.8
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.5e-99 366.7 515 39.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 4.2e-99 365.9 425 45.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 4.7e-98 362.5 447 44.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.1e-98 362.1 198 84.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.6e-96 356.7 198 83.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.3e-87 327.8 259 62.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 6.4e-79 298.9 225 66.7
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-72 276.9 243 61.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.8e-72 275.8 258 56.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.5e-67 260.4 178 69.7
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 6.4e-63 245.7 178 69.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.6e-61 241.1 162 72.2
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 6.6e-60 235.7 154 72.7
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.1e-58 228.8 356 43.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.1e-57 226.9 181 64.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.9e-55 220.3 362 42.3
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 9.3e-54 215.3 247 49.4
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.5e-53 213.4 121 78.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 6.0e-53 212.6 127 79.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-52 211.8 124 77.4
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.9e-51 207.6 198 56.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.9e-47 193.7 125 74.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-37 160.6 122 60.7
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.6e-37 159.8 130 66.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.0e-33 146.7 95 70.5
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 5.1e-28 129.8 88 71.6
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.1e-25 122.1 71 78.9
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 6.9e-25 119.4 66 81.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.4e-17 95.1 89 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 9.0e-17 92.4 89 48.3
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.0e-15 86.7 67 64.2
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.8e-12 75.9 59 67.8
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.1e-09 68.9 58 56.9
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 7.7e-08 62.8 35 74.3
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.7e-07 61.6 299 23.7


User provided reference genes

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