Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.5e-141 506.1 253 100.0
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.2e-135 484.2 253 94.9
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.4e-134 483.0 253 94.5
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.7e-129 466.1 253 91.7
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 2.3e-129 465.7 253 92.1
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 5.1e-129 464.5 253 89.7
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 6.6e-129 464.2 254 90.2
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 6.6e-129 464.2 254 90.2
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 6.6e-129 464.2 253 90.9
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 6.6e-129 464.2 254 90.6
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-127 459.9 253 90.1
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.6e-127 459.5 252 90.1
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.6e-127 459.5 252 90.5
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 2.1e-127 459.1 253 90.1
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 6.2e-127 457.6 253 90.1
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 8.1e-127 457.2 255 90.2
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.8e-126 456.1 253 88.5
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.1e-126 455.3 254 89.0
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.0e-126 454.9 253 88.1
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.0e-126 454.9 250 90.0
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.0e-126 454.9 250 90.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 6.9e-126 454.1 257 88.7
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.5e-125 453.0 255 88.6
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.5e-125 453.0 255 88.6
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.5e-125 453.0 254 89.4
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.0e-125 452.6 253 89.3
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 2.0e-125 452.6 254 89.0
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 3.4e-125 451.8 253 88.5
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 4.4e-125 451.4 253 87.4
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 87.4
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 88.1
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 7.6e-125 450.7 253 86.6
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 1.3e-124 449.9 253 86.2
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.3e-124 449.9 253 87.0
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 2.2e-124 449.1 252 87.7
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 2.9e-124 448.7 253 87.7
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.8e-124 448.4 253 85.0
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 6.4e-124 447.6 253 85.4
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 8.4e-124 447.2 253 85.4
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 2.4e-123 445.7 258 86.4
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.4e-123 445.7 255 89.0
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.4e-123 445.7 249 87.6
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 85.0
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 5.4e-123 444.5 254 86.6
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 7.1e-123 444.1 253 84.6
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.6e-122 443.0 253 87.0
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 1.6e-122 443.0 253 84.2
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 2.1e-122 442.6 256 85.9
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.1e-122 442.6 253 85.4
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.7e-122 442.2 275 82.9
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 3.5e-122 441.8 253 84.6
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 3.5e-122 441.8 253 84.2
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 3.5e-122 441.8 249 86.7
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 6.0e-122 441.0 254 86.2
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 7.8e-122 440.7 254 85.8
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.3e-121 439.9 252 84.1
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.3e-121 439.9 258 85.3
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.3e-121 439.9 254 85.4
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.7e-121 439.5 256 85.5
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 1.7e-121 439.5 254 85.8
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 1.7e-121 439.5 257 85.6
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.3e-121 439.1 280 80.0
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 8.7e-121 437.2 254 85.0
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 4.3e-120 434.9 249 85.9
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 4.3e-120 434.9 262 84.0
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 7.3e-120 434.1 250 84.4
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.3e-119 433.3 257 83.7
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.3e-119 433.3 259 84.2
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 4.8e-119 431.4 249 82.7
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 2.4e-118 429.1 254 83.1
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 3.1e-118 428.7 256 84.4
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 3.1e-118 428.7 255 82.4
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 4.0e-118 428.3 256 81.6
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 4.0e-118 428.3 249 82.7
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 5.3e-118 427.9 239 85.8
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 9.0e-118 427.2 256 84.0
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.5e-117 426.4 294 75.2
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 2.6e-117 425.6 281 77.2
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.3e-113 413.3 225 87.1
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 3.9e-113 411.8 248 79.8
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 3.9e-113 411.8 250 80.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.3e-112 408.3 253 83.0
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 7.4e-112 407.5 252 82.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-111 406.8 226 85.4
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.1e-110 403.7 250 78.4
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.4e-110 402.5 250 78.0
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 4.0e-110 401.7 231 83.5
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 4.0e-110 401.7 231 83.5
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.4e-107 392.5 262 80.2
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.5e-106 388.7 254 76.0
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.3e-105 386.0 257 80.5
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 3.0e-105 385.6 452 50.7
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 8.7e-105 384.0 254 79.1
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.5e-104 383.3 255 77.6
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 7.4e-104 380.9 248 76.2
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 9.6e-104 380.6 249 76.7
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 1.6e-103 379.8 222 82.9
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 4.8e-103 378.3 208 88.9
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 6.9e-102 374.4 249 72.7
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.5e-101 373.2 283 72.4
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.2e-98 363.6 211 85.3
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.1e-98 362.8 249 71.5
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.9e-96 356.3 249 70.7
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 1.8e-94 349.7 253 72.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.0e-92 344.0 209 81.3
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 8.5e-92 340.9 228 71.5
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 1.4e-91 340.1 194 86.1
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 1.9e-91 339.7 236 70.8
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.6e-90 336.7 251 68.5
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 2.7e-90 335.9 199 80.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 7.9e-90 334.3 248 69.8
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.8e-87 325.9 241 70.5
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.3e-84 317.0 268 64.2
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 1.1e-83 313.9 206 79.1
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.6e-82 310.1 249 62.7
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.4e-80 301.2 270 61.9
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.7e-79 300.1 336 55.4
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.2e-77 293.9 253 65.2
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.2e-75 285.8 213 71.8
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.2e-74 283.9 161 84.5
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 4.4e-72 275.4 161 85.7
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 9.7e-72 274.2 207 67.1
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 3.7e-71 272.3 299 54.5
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 3.1e-70 269.2 225 55.1
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 6.1e-66 255.0 228 53.5
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.0e-65 254.2 170 75.3
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 1.4e-65 253.8 238 53.8
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.8e-62 243.4 146 84.9
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 3.2e-59 232.6 206 60.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.8e-57 226.9 182 65.4
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 7.5e-56 221.5 146 73.3
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 1.7e-47 193.7 114 81.6
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 4.1e-46 189.1 112 79.5
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 5.0e-44 182.2 133 74.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.8e-38 163.7 91 84.6
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.5e-35 154.1 174 52.3
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.8e-33 147.1 253 43.5
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 4.0e-33 146.0 93 75.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-30 136.0 94 72.3
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 9.2e-14 81.6 52 73.1


User provided reference genes

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