Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 3994.1 1995 100.0
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 3217.2 1997 82.1
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 3194.4 1997 81.3
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 3126.3 1995 79.8
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 3056.2 2030 77.4
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2422.9 2036 62.8
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2390.1 2008 63.4
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2369.0 2000 63.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2362.4 2008 63.0
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2341.2 2002 62.0
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2339.7 2003 61.3
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2314.3 2015 60.7
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2299.2 2001 60.5
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2298.9 2009 61.4
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2291.2 2006 61.8
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2285.0 2008 61.4
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2277.3 2012 59.9
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2276.9 2025 59.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2273.8 2033 59.9
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2266.9 2001 59.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2259.6 2000 59.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2253.8 2001 60.2
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2249.6 1981 61.0
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2247.2 2008 59.6
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2224.5 2026 60.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2223.7 2028 58.8
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2211.4 2033 59.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 2204.1 1452 77.7
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 2191.4 1452 77.1
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2160.2 2025 59.5
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2155.6 2024 58.9
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2150.2 2021 58.2
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 2077.0 2006 56.7
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2064.3 2033 55.8
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2051.9 2020 55.0
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2047.3 2017 55.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2046.2 2031 54.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 2014.6 2013 54.0
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1996.9 2008 54.0
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1993.8 2010 54.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1992.6 2011 54.2
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1983.8 2014 54.5
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1980.7 2048 53.2
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1958.3 2016 53.2
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1950.3 2002 53.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1937.5 2002 53.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1927.9 2014 52.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1922.5 2017 53.1
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1906.7 2012 52.8
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1878.6 2010 52.3
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1874.0 2013 52.7
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1858.6 2007 51.9
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1857.4 2029 52.0
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1848.6 2009 51.2
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1840.1 2018 50.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1837.8 2015 50.7
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1837.8 2015 51.0
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1826.2 1998 51.9
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1825.8 2017 50.8
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1821.6 2011 51.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1819.3 2005 51.9
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1801.9 2007 51.4
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1801.9 1725 57.6
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1795.0 2011 51.2
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1788.5 2018 50.8
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1784.2 1727 57.2
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1781.1 2048 50.0
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1771.5 2069 48.8
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1768.8 2000 51.0
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1768.8 2010 51.2
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1758.0 2019 51.0
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1748.8 1941 51.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1745.3 2005 50.1
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1744.2 1977 51.1
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1731.1 1932 50.7
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1721.4 2010 49.8
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1721.4 1940 49.7
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1716.8 2014 49.7
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1715.3 2013 49.6
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1714.1 2013 49.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1713.0 2013 49.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1703.0 2011 47.8
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1672.1 2038 47.0
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1658.3 1936 49.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1625.1 1951 48.4
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1623.2 2016 45.9
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1607.8 2021 47.4
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1593.2 2129 44.2
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1588.2 1789 49.9
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1585.9 2015 46.6
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1562.0 1989 46.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1520.8 2018 45.4
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1380.5 1208 61.3
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1356.7 2091 41.3
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1309.7 1733 44.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1169.5 2021 36.7
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1168.3 1707 42.5
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1083.6 2131 34.9
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.5e-292 1010.7 1681 38.4
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 5.4e-266 922.5 1482 38.4
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 8.9e-253 878.6 2173 31.7
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.0e-216 758.8 2102 30.2
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.5e-215 755.0 675 61.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 7.6e-212 742.7 1986 30.8
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-170 605.1 1208 35.1
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.1e-165 587.4 1735 29.2
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 7.5e-159 566.6 1905 26.9
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 8.3e-150 536.6 444 64.2
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.9e-140 503.8 399 62.4
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 8.3e-134 483.4 1142 32.8
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.9e-130 472.2 346 69.4
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 3.9e-123 448.0 277 81.9
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.1e-121 442.2 438 54.1
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.3e-118 433.0 382 55.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-114 419.5 358 62.8
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 7.1e-101 374.0 276 67.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-86 325.5 518 41.5
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 7.6e-79 300.8 198 73.2
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.5e-71 276.6 260 58.5
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 3.8e-70 271.9 370 42.7
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.8e-57 229.2 172 64.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 9.1e-56 224.2 214 57.0
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 5.5e-53 214.9 180 62.2
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.2e-45 189.1 509 29.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.6e-42 179.5 312 40.4
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-35 157.5 178 53.9
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.5e-31 142.1 83 75.9
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-29 136.3 584 24.3
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 3.0e-27 129.4 223 34.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.9e-25 122.1 325 25.8
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.7e-23 116.3 64 89.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.6e-23 115.5 64 89.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.6e-23 115.5 64 89.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 5.0e-22 112.1 270 30.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.6e-20 105.9 105 54.3
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-19 103.2 100 47.0
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.8e-19 101.7 64 75.0
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 2.6e-18 99.8 62 80.6
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 4.9e-17 95.5 102 51.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.4e-16 94.0 68 80.9
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.9e-13 83.6 47 87.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 5.6e-13 82.0 125 39.2
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.1e-11 76.3 55 65.5
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 7.1e-08 65.1 46 65.2


User provided reference genes

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