Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 6.9e-257 890.2 468 100.0
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 8.5e-223 776.9 469 87.0
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.5e-219 766.1 468 86.5
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 4.5e-216 754.6 469 85.3
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 1.6e-197 693.0 468 79.5
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 5.8e-195 684.5 469 78.5
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.0e-188 661.8 466 74.5
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.4e-185 653.3 468 73.3
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 9.2e-185 650.6 473 72.7
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.0e-183 647.1 472 72.2
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 2.3e-183 646.0 470 73.8
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 2.3e-183 646.0 470 73.8
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.1e-181 639.4 466 72.5
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.0e-179 632.9 466 72.3
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 3.4e-179 632.1 474 70.3
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 4.4e-179 631.7 473 71.2
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 5.8e-179 631.3 475 72.0
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.3e-178 630.2 469 71.6
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 2.2e-178 629.4 467 70.4
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.1e-177 627.1 465 69.2
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.9e-177 626.3 470 73.0
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 3.2e-177 625.5 506 66.4
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.1e-176 622.9 467 71.3
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.0e-175 620.5 476 68.9
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.1e-174 617.1 464 70.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 4.3e-174 615.1 463 69.5
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.3e-173 613.6 467 69.2
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 4.8e-173 611.7 467 68.3
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 1.1e-172 610.5 475 69.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 3.4e-171 605.5 465 68.2
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.3e-170 603.6 468 69.4
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.1e-169 600.5 465 68.2
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.4e-169 600.1 468 69.2
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.6e-168 595.1 463 68.3
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.0e-167 594.0 465 67.5
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.3e-167 593.6 468 68.4
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.7e-167 593.2 463 68.3
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.0e-167 592.4 461 67.7
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.9e-167 592.0 502 65.5
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.9e-166 589.7 463 67.8
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.5e-166 589.3 501 65.7
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 2.5e-166 589.3 492 66.5
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 9.6e-166 587.4 467 65.3
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.8e-165 585.1 464 66.8
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.8e-164 583.2 464 66.4
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 6.9e-164 581.3 465 66.0
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 4.5e-163 578.6 473 65.1
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 4.5e-163 578.6 460 67.8
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.7e-162 576.6 464 66.8
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.2e-162 576.2 459 66.9
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 2.9e-162 575.9 461 66.4
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 2.9e-162 575.9 472 65.9
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.8e-162 575.5 472 66.3
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.9e-161 573.2 489 62.8
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 4.2e-161 572.0 465 64.9
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 4.2e-161 572.0 467 65.5
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 4.2e-161 572.0 465 65.2
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 7.1e-161 571.2 474 65.8
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 7.1e-161 571.2 466 65.9
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.2e-160 570.5 467 65.3
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 1.2e-160 570.5 488 64.8
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.1e-160 569.7 464 66.4
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.7e-160 569.3 467 66.0
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.0e-159 565.8 470 64.3
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 8.7e-159 564.3 469 65.9
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.3e-158 562.4 465 63.2
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 2.1e-157 559.7 463 64.8
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.8e-157 559.3 467 64.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 9.0e-156 554.3 480 60.0
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 3.4e-155 552.4 466 63.3
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 4.5e-155 552.0 466 63.5
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 7.6e-155 551.2 472 61.9
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 6.4e-154 548.1 472 62.9
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 2.5e-153 546.2 443 67.5
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.3e-151 540.4 469 62.0
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 8.7e-151 537.7 428 66.4
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 3.3e-150 535.8 489 61.3
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.3e-149 533.9 485 59.0
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.6e-149 533.5 467 59.3
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 5.8e-147 525.0 424 67.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.7e-146 523.5 465 61.5
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.2e-146 523.1 467 62.5
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.0e-143 512.7 436 66.5
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.3e-141 507.3 407 66.1
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.4e-140 503.8 478 57.3
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 1.4e-140 503.8 323 83.3
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 2.4e-140 503.1 371 70.6
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 8.5e-138 494.6 474 57.0
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.2e-136 490.7 488 54.7
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 2.4e-132 476.5 374 67.6
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.8e-127 460.3 322 75.8
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 6.7e-127 458.4 467 54.6
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 7.4e-126 454.9 467 54.0
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.3e-125 454.1 369 67.5
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 6.3e-125 451.8 464 53.4
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 6.5e-122 441.8 466 53.6
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 2.5e-121 439.9 332 69.9
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 2.4e-116 423.3 476 49.4
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 8.3e-109 398.3 515 48.3
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 5.0e-106 389.0 349 61.6
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 6.8e-103 378.6 367 55.9
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 3.1e-100 369.8 332 60.5
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.8e-98 362.8 326 61.7
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 2.2e-93 347.1 306 64.4
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 2.1e-88 330.5 267 67.8
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 4.7e-88 329.3 350 52.0
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 5.8e-86 322.4 220 74.5
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.9e-81 307.4 489 37.6
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.4e-68 263.8 435 38.2
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 4.7e-64 249.6 351 46.4
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.7e-58 231.1 497 33.0
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.9e-52 211.1 498 33.7
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.6e-48 196.8 156 66.7
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 3.4e-46 190.3 194 55.7
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 3.7e-32 143.7 502 26.3
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.0e-29 135.6 381 34.9
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.9e-29 134.0 128 59.4
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.9e-25 121.3 405 25.2
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 9.7e-25 119.0 81 70.4
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 9.7e-25 119.0 141 50.4
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-24 118.2 430 26.7
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 3.7e-24 117.1 82 72.0
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 4.8e-24 116.7 81 70.4
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 4.8e-24 116.7 85 70.6
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 6.1e-19 99.8 100 52.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 3.7e-16 90.5 100 51.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 8.8e-10 69.3 125 38.4
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 7.4e-09 66.2 125 37.6
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 5.9e-06 56.6 40 67.5
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 5.9e-06 56.6 52 57.7


User provided reference genes

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