Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 5.1e-145 517.7 257 100.0
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 8.0e-122 440.7 257 85.2
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.6e-120 435.6 258 85.3
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 9.7e-120 433.7 257 84.0
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 4.1e-118 428.3 248 85.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.7e-104 381.3 222 82.9
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 4.7e-90 335.1 243 68.3
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 7.8e-85 317.8 236 66.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.3e-84 317.0 254 63.4
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 3.3e-83 312.4 256 61.7
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 9.5e-83 310.8 252 59.9
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 3.6e-82 308.9 253 61.3
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 4.7e-82 308.5 251 60.6
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 8.9e-81 304.3 230 64.8
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.3e-79 300.4 230 66.5
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 1.7e-79 300.1 229 63.8
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.9e-78 296.6 250 60.4
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 4.1e-78 295.4 230 65.7
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.2e-77 293.9 201 69.7
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.9e-76 288.9 229 62.0
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.9e-75 286.6 257 57.2
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.1e-74 283.1 263 55.1
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.8e-73 280.0 253 55.7
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 2.3e-73 279.6 257 54.5
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 5.2e-73 278.5 187 68.4
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.5e-72 276.9 229 59.4
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.0e-72 276.6 232 55.2
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 7.6e-72 274.6 237 59.5
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.9e-71 272.7 236 58.9
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 6.4e-71 271.6 207 64.3
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 6.4e-71 271.6 255 55.3
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 6.4e-71 271.6 234 57.7
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.1e-70 270.8 253 55.7
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 7.1e-70 268.1 232 57.8
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 9.2e-70 267.7 258 55.4
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.2e-70 267.7 225 56.4
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.6e-69 266.9 231 52.4
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.1e-69 266.5 239 56.9
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.1e-69 266.5 232 58.6
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 7.8e-69 264.6 240 53.3
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 7.8e-69 264.6 233 58.4
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.7e-68 263.5 230 53.9
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 1.7e-68 263.5 225 54.2
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.0e-68 262.7 225 54.2
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 5.1e-68 261.9 223 55.2
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.1e-67 260.8 232 56.9
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.5e-67 260.4 237 51.9
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.5e-67 260.4 231 51.5
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.9e-67 260.0 241 51.0
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 1.9e-67 260.0 206 60.2
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.9e-67 260.0 225 53.8
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.6e-67 258.5 223 55.2
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.6e-67 257.7 239 55.2
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.2e-66 257.3 229 55.5
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 2.8e-66 256.1 195 59.0
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.6e-66 255.8 232 56.0
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.7e-66 255.4 230 54.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 6.2e-66 255.0 237 51.1
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 6.2e-66 255.0 201 59.7
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.8e-65 253.4 221 54.8
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 2.4e-65 253.1 260 49.2
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 3.1e-65 252.7 217 55.3
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 5.2e-65 251.9 213 57.7
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 8.9e-65 251.1 233 52.8
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.2e-64 250.8 202 54.5
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 4.4e-64 248.8 231 51.9
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 4.4e-64 248.8 231 51.9
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 4.4e-64 248.8 233 51.9
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 9.9e-64 247.7 238 49.2
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 8.4e-63 244.6 191 59.2
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-62 244.2 233 55.4
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.4e-62 243.8 177 59.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.9e-62 243.4 236 50.0
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.4e-62 243.0 231 51.1
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.4e-62 243.0 231 51.1
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.2e-62 242.7 205 53.2
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 3.2e-62 242.7 209 57.9
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 9.3e-62 241.1 231 51.5
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 1.2e-61 240.7 212 51.9
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.7e-61 239.6 170 65.3
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 6.0e-61 238.4 170 64.7
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 5.1e-60 235.3 199 51.3
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 2.8e-58 229.6 188 58.5
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 5.8e-56 221.9 219 48.4
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 7.6e-56 221.5 219 47.9
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 9.9e-56 221.1 157 63.1
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 5.4e-54 215.3 168 60.1
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 3.5e-53 212.6 169 58.0
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.0e-52 211.1 207 53.6
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 2.4e-49 199.9 160 58.1
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.6e-48 196.4 204 48.5
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 2.3e-44 183.3 157 60.5
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.4e-41 174.1 180 52.2
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 4.0e-41 172.6 134 61.9
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 2.0e-40 170.2 177 52.0
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.4e-38 164.1 172 44.8
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 6.7e-36 155.2 140 54.3
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 5.0e-31 139.0 255 33.7
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.3e-27 126.3 113 53.1
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.7e-26 122.9 137 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.4e-25 120.9 135 40.7
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.8e-23 112.8 82 54.9
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.2e-22 109.4 82 54.9
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.6e-21 106.3 219 31.5
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.5e-19 100.9 141 36.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.4e-19 98.6 68 64.7
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.7e-19 98.2 84 52.4
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 6.3e-18 95.5 163 35.0
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 8.2e-18 95.1 207 30.9
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 8.2e-18 95.1 182 31.9
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 2.4e-17 93.6 194 29.9
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 4.1e-17 92.8 84 51.2
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.4e-16 89.7 115 42.6
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 5.9e-16 89.0 170 32.9
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 3.8e-15 86.3 62 64.5
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 3.8e-15 86.3 187 29.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.9e-14 84.0 175 28.0
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 3.2e-14 83.2 174 30.5
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 3.2e-14 83.2 186 27.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 4.2e-14 82.8 159 30.8
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 5.5e-14 82.4 175 28.0
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 5.5e-14 82.4 189 29.1
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 7.2e-14 82.0 158 31.6
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.2e-13 81.3 106 45.3
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 1.6e-13 80.9 181 28.7
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 2.1e-13 80.5 213 23.5
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 2.7e-13 80.1 197 25.4
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 4.7e-13 79.3 134 32.1
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 4.7e-13 79.3 163 30.1
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 7.9e-13 78.6 213 23.5
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 1.8e-12 77.4 147 27.9
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.8e-12 77.4 205 26.3
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 2.3e-12 77.0 165 31.5
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 3.0e-12 76.6 127 36.2
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 8.8e-12 75.1 208 26.0
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.0e-11 73.9 207 27.1
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 2.0e-11 73.9 188 25.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 4.4e-11 72.8 165 30.3
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.4e-11 72.8 164 30.5
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 7.4e-11 72.0 164 29.9
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 7.4e-11 72.0 186 26.3
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 6.3e-10 68.9 164 30.5
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 1.4e-09 67.8 144 29.9
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 1.8e-09 67.4 172 27.3
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.4e-09 67.0 133 30.8
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 5.3e-09 65.9 181 24.3
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.2e-08 64.7 170 25.9
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 1.2e-08 64.7 155 29.7
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.0e-08 63.9 164 29.9
Actinidia17847 Actinidia chinensis HOM05D000827 ORTHO05D008888 2.6e-08 63.5 82 40.2
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 2.6e-08 63.5 36 69.4
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 2.9e-07 60.1 150 28.0
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.1e-06 58.2 134 27.6
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 4.2e-06 56.2 172 25.0


User provided reference genes

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