Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 2.1e-70 268.9 131 100.0
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 3.4e-52 208.4 130 77.7
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 6.0e-49 197.6 131 72.5
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 1.8e-29 132.9 131 53.4
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.4e-27 124.4 132 44.7
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 8.4e-27 124.0 132 44.7
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-26 123.2 131 48.1
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.5e-26 121.3 131 48.1
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.5e-26 121.3 131 47.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.2e-25 120.2 131 46.6
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.2e-25 120.2 131 46.6
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.2e-25 120.2 131 45.8
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.1e-25 119.4 131 46.6
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.7e-25 119.0 131 45.8
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-25 118.6 131 45.8
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.6e-25 118.2 122 48.4
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-24 116.3 131 46.6
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-24 114.4 131 45.8
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-24 114.4 121 47.9
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-24 114.4 131 45.8
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.7e-24 114.4 131 45.0
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 8.7e-24 114.0 131 45.8
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-23 113.6 131 45.0
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.5e-23 113.2 131 45.8
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.3e-23 112.1 131 44.3
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.6e-20 100.9 131 41.2
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-19 99.8 131 41.2
Gorai.008G022300 Gossypium raimondii HOM05D008353 ORTHO05D218896 1.1e-18 97.1 131 42.7
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 3.7e-14 82.0 117 37.6
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 1.5e-12 76.6 118 37.3
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 1.0e-11 73.9 118 33.9
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 1.7e-11 73.2 117 36.8
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.9e-11 72.4 118 35.6
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 5.0e-11 71.6 121 38.0
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 6.5e-11 71.2 121 31.4
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.5e-11 71.2 116 35.3
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.4e-10 70.1 118 33.9
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 2.5e-10 69.3 126 33.3
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.2e-10 68.9 116 36.2
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.2e-10 68.9 119 34.5
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 3.2e-10 68.9 116 36.2
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 3.2e-10 68.9 128 35.2
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 4.2e-10 68.6 119 34.5
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 9.3e-10 67.4 118 33.1
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 1.2e-09 67.0 123 33.3
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 3.5e-09 65.5 118 31.4
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.6e-09 65.1 118 31.4
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 4.6e-09 65.1 118 31.4
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 4.6e-09 65.1 119 36.1
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.1e-09 64.7 118 31.4
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.1e-09 64.7 118 31.4
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.8e-08 63.2 78 38.5
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 3.0e-08 62.4 119 34.5
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 3.0e-08 62.4 120 38.3
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.7e-08 60.8 119 31.1
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 8.7e-08 60.8 118 31.4
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-07 60.5 119 31.1
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 2.5e-07 59.3 120 29.2
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-07 59.3 121 31.4
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 2.5e-07 59.3 118 31.4
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-07 58.9 119 31.1
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-06 57.0 119 31.1
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.2e-06 54.3 117 29.9
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 8.2e-06 54.3 132 29.5


User provided reference genes

Program Settings