Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 1.3e-87 326.2 155 100.0
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 1.8e-52 209.5 130 77.7
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 2.7e-48 195.7 130 70.0
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 2.4e-33 146.0 133 55.6
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.8e-29 131.7 130 50.0
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-28 129.8 130 49.2
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.8e-28 129.8 130 49.2
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.0e-28 128.6 130 48.5
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.9e-28 127.9 130 48.5
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.6e-27 125.9 123 50.4
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.5e-27 125.2 130 46.2
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.8e-27 124.8 131 48.1
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.6e-27 124.4 131 48.1
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-26 123.6 130 46.2
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-26 123.6 130 45.4
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.8e-26 122.1 130 49.2
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.5e-26 121.3 130 47.7
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 8.4e-26 120.9 130 48.5
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 8.4e-26 120.9 130 46.2
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-25 120.2 121 48.8
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.4e-25 120.2 130 48.5
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.9e-25 119.8 130 46.9
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.9e-25 119.8 130 46.9
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-23 113.2 130 43.1
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.3e-23 112.8 130 42.3
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-22 110.2 130 43.8
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-20 103.2 130 40.0
Gorai.008G022300 Gossypium raimondii HOM05D008353 ORTHO05D218896 3.8e-18 95.5 130 43.8
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 4.5e-11 72.0 120 32.5
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 1.3e-10 70.5 117 33.3
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.8e-10 68.9 121 33.9
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 5.0e-10 68.6 116 37.1
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-10 68.6 121 33.9
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 5.0e-10 68.6 118 32.2
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 8.5e-10 67.8 126 31.7
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.1e-09 67.4 118 35.6
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.4e-09 67.0 116 37.1
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.4e-09 67.0 116 37.1
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.9e-09 66.6 121 34.7
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.2e-09 65.5 118 31.4
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-09 65.1 119 33.6
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 9.4e-09 64.3 118 33.1
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.6e-08 63.5 138 29.7
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 2.1e-08 63.2 119 31.9
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 2.7e-08 62.8 118 29.7
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 3.6e-08 62.4 99 33.3
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 3.6e-08 62.4 118 29.7
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 4.6e-08 62.0 119 32.8
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.6e-08 62.0 118 29.7
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.1e-08 61.6 119 32.8
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.4e-07 60.5 126 29.4
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.3e-07 59.7 118 28.8
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.3e-07 59.7 118 28.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-07 59.7 121 32.2
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-07 57.8 121 32.2
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 2.5e-06 56.2 118 28.8
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 9.7e-06 54.3 118 28.8


User provided reference genes

Program Settings